Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k18
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    32   0.031
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    29   0.38 
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   2.7  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   3.5  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   4.7  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    24   8.1  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    24   8.1  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 32.3 bits (70), Expect = 0.031
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = -1

Query: 283 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTL 104
           D D SL +  V N+ +ND+I N+          +  +LS    D        +   TFT+
Sbjct: 196 DNDDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTM 254

Query: 103 HRFVDDNVLTQDE 65
           ++F D +VL +D+
Sbjct: 255 NKFADLSVLEEDD 267



 Score = 26.6 bits (56), Expect = 1.5
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -1

Query: 283 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSV 116
           D D +  L R+  +F+ND  +  + +K     + S    R+ V  L+HAL N++++
Sbjct: 514 DSD-NASLTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYVRRLVHALANDLNL 568


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -1

Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALL 131
           +QV+PD   S +  R++N F+ND  E    +  KL    +  + +S R++   +  +L
Sbjct: 46  KQVHPDTGISNQAMRILNSFVNDIFERIATEASKLA-AYNKKSTISSREIQTAVRLIL 102


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
 Frame = -1

Query: 232 DEIENDKIYKLVETVD------SSNKLSRRQVDFLIHAL 134
           +EIEN+ + K VET+D      +  K+S++ V FL H +
Sbjct: 164 EEIENELLTKGVETIDFEHATTTKPKVSKQVVAFLQHGI 202


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = -1

Query: 211 IYKLVETVDSSNKLSRRQVDFLIHALLNN---VSVTFTLHRFVDDNVLTQDELSFLANFL 41
           +Y + ETVD  NKL    V+     + ++   V VT          VL  D+   L  + 
Sbjct: 147 LYSIAETVDLDNKLLLDFVNLFSQTITDSSRTVRVTSVQGLGAIAEVLESDDKKLLHAYR 206

Query: 40  VTKPGRSIPIAGV 2
            T PG  + +  V
Sbjct: 207 ATLPGMLLVLQDV 219


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 336 CPWSKPLLAIG 304
           CPW K LLA+G
Sbjct: 340 CPWQKSLLAVG 350


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 202 VCRFCHFQFHRLKTC*LL 255
           VCR CH   H   TC L+
Sbjct: 150 VCRTCHTDTHTSSTCPLI 167


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 33  FVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT 125
           F+ RKF   LSSS ++ L++    N++   T
Sbjct: 860 FINRKFGVLLSSSFIQQLNTVENLNLSFNST 890


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,477,520
Number of Sequences: 5004
Number of extensions: 24248
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)