Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k18
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0514 + 29686263-29686728,29687078-29687313,29687435-296875... 28 2.6
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 28 3.4
08_02_1090 + 24254172-24254624 27 7.8
05_07_0203 + 28391707-28392165 27 7.8
03_02_0560 + 9462996-9463454 27 7.8
01_06_1288 - 36007432-36007851 27 7.8
01_01_0366 + 2871188-2871655 27 7.8
01_01_0364 - 2856598-2857059 27 7.8
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 27 7.8
01_01_0360 - 2837046-2837507 27 7.8
01_01_0358 - 2819235-2819696 27 7.8
01_01_0331 + 2685802-2686263 27 7.8
01_01_0329 + 2673479-2673940 27 7.8
>02_05_0514 +
29686263-29686728,29687078-29687313,29687435-29687575,
29687685-29687915
Length = 357
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/88 (23%), Positives = 42/88 (47%)
Frame = -1
Query: 289 YPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTF 110
Y +D +L K ++ +F + +++ KIY + ++ +R + ++ N S
Sbjct: 31 YSQEDLALPNK-LVGLFTSWSVKHSKIYASPKEKVKRYEIFKRNLRHIVETNRRNGSYWL 89
Query: 109 TLHRFVDDNVLTQDELSFLANFLVTKPG 26
L+ F D + +E F A++L KPG
Sbjct: 90 GLNHFAD---IAHEE--FKASYLGLKPG 112
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 RQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANF-LVTKPGRSIPI 11
RQ+D IHA+L N + ++ F+ + E LAN +T+ GRS+ I
Sbjct: 2305 RQLDPYIHAILKNTN-RMVMYCFLPTFLKNMGEDDLLANLAFLTETGRSLGI 2355
>08_02_1090 + 24254172-24254624
Length = 150
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 72 KQVHPDIGISSKAMSIMNSFINDIFE 97
>05_07_0203 + 28391707-28392165
Length = 152
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 74 KQVHPDIGISSKAMSIMNSFINDIFE 99
>03_02_0560 + 9462996-9463454
Length = 152
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 74 KQVHPDIGISSKAMSIMNSFINDIFE 99
>01_06_1288 - 36007432-36007851
Length = 139
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 61 KQVHPDIGISSKAMSIMNSFINDIFE 86
>01_01_0366 + 2871188-2871655
Length = 155
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 77 KQVHPDIGISSKAMSIMNSFINDIFE 102
>01_01_0364 - 2856598-2857059
Length = 153
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 612 KQVHPDIGISSKAMSIMNSFINDIFE 637
>01_01_0360 - 2837046-2837507
Length = 153
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0358 - 2819235-2819696
Length = 153
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0331 + 2685802-2686263
Length = 153
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0329 + 2673479-2673940
Length = 153
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,948,429
Number of Sequences: 37544
Number of extensions: 139620
Number of successful extensions: 365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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