Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k18
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033514-19|CAA22104.1| 696|Caenorhabditis elegans Hypothetical... 29 1.8
AC006610-3|AAK85449.1| 264|Caenorhabditis elegans Hypothetical ... 29 1.8
Z49867-1|CAA90027.1| 312|Caenorhabditis elegans Hypothetical pr... 27 4.1
AF016446-9|AAC24169.2| 340|Caenorhabditis elegans Hypothetical ... 27 4.1
Z93388-7|CAB07654.1| 141|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z92789-3|CAB07220.1| 123|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z83245-9|CAB05832.1| 122|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z83245-5|CAB05830.1| 122|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z82271-3|CAB05211.1| 123|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81495-1|CAB04061.1| 122|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z73102-9|CAA97413.1| 123|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z70750-5|CAA94740.1| 123|Caenorhabditis elegans Hypothetical pr... 27 5.4
X15633-2|CAA33642.1| 122|Caenorhabditis elegans histone protein... 27 5.4
U80027-12|AAC48126.2| 493|Caenorhabditis elegans Hypothetical p... 27 5.4
U64845-11|AAC48034.2| 108|Caenorhabditis elegans Histone protei... 27 5.4
U64845-7|AAC48023.1| 123|Caenorhabditis elegans Histone protein... 27 5.4
U64843-7|AAF98225.1| 123|Caenorhabditis elegans Histone protein... 27 5.4
U64843-6|AAF98230.1| 123|Caenorhabditis elegans Histone protein... 27 5.4
U58750-8|AAB00648.1| 123|Caenorhabditis elegans Histone protein... 27 5.4
U40934-8|AAK84525.1| 122|Caenorhabditis elegans Histone protein... 27 5.4
U28928-7|AAA68339.1| 665|Caenorhabditis elegans Peroxisomal mem... 27 5.4
AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical ... 27 5.4
AF047656-5|AAC05103.1| 122|Caenorhabditis elegans Histone prote... 27 5.4
AC024696-7|AAK84513.1| 141|Caenorhabditis elegans Histone prote... 27 5.4
AC024696-6|AAK84507.1| 141|Caenorhabditis elegans Histone prote... 27 5.4
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 27 7.1
>AL033514-19|CAA22104.1| 696|Caenorhabditis elegans Hypothetical
protein Y75B8A.19 protein.
Length = 696
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 253 VINMFLNDEIENDKIYKL 200
V+ +FLNDE+ NDK+Y L
Sbjct: 206 VVEIFLNDELLNDKLYIL 223
>AC006610-3|AAK85449.1| 264|Caenorhabditis elegans Hypothetical
protein C30F12.3 protein.
Length = 264
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 241 FLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 113
F D+ N+KIYK V TV L+R ++ AL + S T
Sbjct: 207 FFRDKRNNEKIYKEVVTVKKIQLLTRMRISLSAEALGSESSHT 249
>Z49867-1|CAA90027.1| 312|Caenorhabditis elegans Hypothetical
protein C33D3.3 protein.
Length = 312
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 199 LVCRFCHFQFHRLKT 243
LVCR CH FH KT
Sbjct: 162 LVCRNCHLYFHHYKT 176
>AF016446-9|AAC24169.2| 340|Caenorhabditis elegans Hypothetical
protein C02E7.10 protein.
Length = 340
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -1
Query: 208 YKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFLVTKP 29
Y LV V +S+ +++D + +NNV + T+ + ++LT+D +L L P
Sbjct: 90 YVLVIAVTTSSLGKMQKLDLITLPGINNVPMFITMLLIRNSSILTEDVRQWLNIALKIAP 149
Query: 28 G 26
G
Sbjct: 150 G 150
>Z93388-7|CAB07654.1| 141|Caenorhabditis elegans Hypothetical
protein T10C6.11 protein.
Length = 141
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 62 KQVHPDTGVSSKAMSIMNSFVNDVFE 87
>Z92789-3|CAB07220.1| 123|Caenorhabditis elegans Hypothetical
protein H02I12.6 protein.
Length = 123
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGVSSKAMSIMNSFVNDVFE 69
>Z83245-9|CAB05832.1| 122|Caenorhabditis elegans Hypothetical
protein ZK131.9 protein.
Length = 122
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 43 KQVHPDTGVSSKAMSIMNSFVNDVFE 68
>Z83245-5|CAB05830.1| 122|Caenorhabditis elegans Hypothetical
protein ZK131.5 protein.
Length = 122
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 43 KQVHPDTGVSSKAMSIMNSFVNDVFE 68
>Z82271-3|CAB05211.1| 123|Caenorhabditis elegans Hypothetical
protein F54E12.4 protein.
Length = 123
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGVSSKAMSIMNSFVNDVFE 69
>Z81495-1|CAB04061.1| 122|Caenorhabditis elegans Hypothetical
protein F08G2.1 protein.
Length = 122
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 43 KQVHPDTGVSSKAMSIMNSFVNDVFE 68
>Z73102-9|CAA97413.1| 123|Caenorhabditis elegans Hypothetical
protein B0035.8 protein.
Length = 123
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGVSSKAMSIMNSFVNDVFE 69
>Z70750-5|CAA94740.1| 123|Caenorhabditis elegans Hypothetical
protein C50F4.5 protein.
Length = 123
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGVSSKAMSIMNSFVNDVFE 69
>X15633-2|CAA33642.1| 122|Caenorhabditis elegans histone protein
protein.
Length = 122
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 43 KQVHPDTGVSSKAMSIMNSFVNDVFE 68
>U80027-12|AAC48126.2| 493|Caenorhabditis elegans Hypothetical
protein T28A11.17 protein.
Length = 493
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 3 TPAIGMLRPGFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT-LFNNA 140
TP +G TR++A K ++S + + NL N+N+TLT +F N+
Sbjct: 93 TPTVGSEFFDEATREYATKKNNSEKFSFALENLENLNLTLTNVFYNS 139
>U64845-11|AAC48034.2| 108|Caenorhabditis elegans Histone protein
39 protein.
Length = 108
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 29 KQVHPDTGVSSKAMSIMNSFVNDVFE 54
>U64845-7|AAC48023.1| 123|Caenorhabditis elegans Histone protein 8
protein.
Length = 123
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGVSSKAMSIMNSFVNDVFE 69
>U64843-7|AAF98225.1| 123|Caenorhabditis elegans Histone protein 20
protein.
Length = 123
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGVSSKAMSIMNSFVNDVFE 69
>U64843-6|AAF98230.1| 123|Caenorhabditis elegans Histone protein 22
protein.
Length = 123
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGVSSKAMSIMNSFVNDVFE 69
>U58750-8|AAB00648.1| 123|Caenorhabditis elegans Histone protein 62
protein.
Length = 123
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGVSSKAMSIMNSFVNDVFE 69
>U40934-8|AAK84525.1| 122|Caenorhabditis elegans Histone protein 29
protein.
Length = 122
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 43 KQVHPDTGVSSKAMSIMNSFVNDVFE 68
>U28928-7|AAA68339.1| 665|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 1 protein.
Length = 665
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 292 VYPDKDFSLKLKRVINMFLNDEIENDKIYKLVE 194
+YPD F +K+K + + L +EN ++ ++E
Sbjct: 530 IYPDTSFDMKMKGMSDKDLEQMLENVQLTNILE 562
>AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical
protein F58E2.3 protein.
Length = 688
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/22 (59%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
Frame = +3
Query: 96 NLCNV-NVTLTLFNNACIKKST 158
NL NV NV++++F+NA IKK+T
Sbjct: 370 NLINVENVSVSIFDNAGIKKAT 391
>AF047656-5|AAC05103.1| 122|Caenorhabditis elegans Histone protein
34 protein.
Length = 122
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 43 KQVHPDTGVSSKAMSIMNSFVNDVFE 68
>AC024696-7|AAK84513.1| 141|Caenorhabditis elegans Histone protein
54 protein.
Length = 141
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 62 KQVHPDTGVSSKAMSIMNSFVNDVFE 87
>AC024696-6|AAK84507.1| 141|Caenorhabditis elegans Histone protein
52 protein.
Length = 141
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EQVYPDKDFSLKLKRVINMFLNDEIE 221
+QV+PD S K ++N F+ND E
Sbjct: 62 KQVHPDTGVSSKAMSIMNSFVNDVFE 87
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 280 KDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNN--VSVTFT 107
+D + + RV N + E+ + + V T + + LSR Q+ + LLNN +S
Sbjct: 437 RDITTEHTRVQNCMIGAEMIDWLLTLFVSTSTTCSSLSRIQMSAIWQVLLNNGLISHIDG 496
Query: 106 LHRFVD 89
H+F+D
Sbjct: 497 EHQFLD 502
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,243,975
Number of Sequences: 27780
Number of extensions: 141718
Number of successful extensions: 416
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -