Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k14
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 64 2e-11
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 54 3e-08
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 53 4e-08
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 44 2e-05
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 44 3e-05
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 43 4e-05
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 42 1e-04
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 41 2e-04
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 40 3e-04
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 38 0.001
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 38 0.001
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 36 0.004
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 0.034
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 30 0.28
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 28 1.5
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 27 2.6
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 2.6
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 3.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 3.5
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 27 3.5
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 4.6
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 64.1 bits (149), Expect = 2e-11
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = -2
Query: 221 CGQKFFTRFALNNHMPTHTGERNFKCKVCEKSYPRLKTLKDHMRIHTNDRRYRCHICGQA 42
C ++F + L +HM THT R F+C +C+KS+ R + H ++HT + + C C Q
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQR 636
Query: 41 FIQNCSLKGHMKS 3
F + +L H KS
Sbjct: 637 FARMDALNRHYKS 649
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = -2
Query: 326 SFPCTM--CDKVCETRRTLTIHWRKDHLKDFRYECQCCGQKFFTRFALNNHMPTHTGERN 153
++ CT C+K L H H ++C C + F + H HTG +
Sbjct: 569 NYVCTFAGCNKRFTRAYNLKSHMNT-HTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKA 627
Query: 152 FKCKVCEKSYPRLKTLKDHMR 90
F C C + + R+ L H +
Sbjct: 628 FACVTCNQRFARMDALNRHYK 648
Score = 33.1 bits (72), Expect = 0.040
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -2
Query: 644 CNXVFPYFHALNKHMNEH--FSNYVCETCGLGFVDKGRFVMHQQRHEQ-GAFPCESCGKV 474
CN F + L HMN H + + C C F + H+Q H AF C +C +
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQR 636
Query: 473 F 471
F
Sbjct: 637 F 637
Score = 28.7 bits (61), Expect = 0.86
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -2
Query: 323 FPCTMCDKVCETRRTLTIHWRKDHLKDFRYECQCCGQKFFTRFALNNHMPTHTGE 159
F C++C K + H + H + C C Q+F ALN H + G+
Sbjct: 600 FQCSICKKSFARQHDKRRH-EQLHTGIKAFACVTCNQRFARMDALNRHYKSEVGQ 653
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = -2
Query: 245 DFRYEC--QCCGQKFFTRFALNNHMPTHTGERNFKCKVCEKSYPRLKTLKDHMRIHTNDR 72
D +Y C C ++ ++ + +H+ TH +R ++C +C+ + R LK H+RIH N R
Sbjct: 440 DGKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGR 499
Query: 71 RYRCHICGQAFIQNCSLKGH 12
Y C C + F + +L H
Sbjct: 500 PYVCE-CLKRFNRLDALNRH 518
Score = 42.3 bits (95), Expect = 7e-05
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 137 CEKSYPRLKTLKDHMRIHTNDRRYRCHICGQAFIQNCSLKGHMK 6
C K R ++ H++ H +DR YRC +C F+++ LK H++
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLR 493
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = -2
Query: 308 CDKVCETRRTLTIHWRKDHLKDFRYECQCCGQKFFTRFALNNHMPTHTGERNFKCKVCEK 129
C+K + + H + HL D Y C C F L H+ H R + C+ C K
Sbjct: 450 CNKRIARKYNVESHIQT-HLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLK 507
Query: 128 SYPRLKTLKDH 96
+ RL L H
Sbjct: 508 RFNRLDALNRH 518
Score = 31.9 bits (69), Expect = 0.092
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = -2
Query: 644 CNXVFPYFHALNKHMNEHFSN--YVCETCGLGFVDKGRFVMHQQRHEQG-AFPCESCGKV 474
CN + + H+ H S+ Y C+ C GFV H + HE G + CE C K
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLK- 507
Query: 473 FKAEYNRDLHVDRVHRKRGRVYC 405
+NR +D ++R + R C
Sbjct: 508 ---RFNR---LDALNRHKQRNIC 524
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -2
Query: 674 LTKEEIRCALCNXVFPYFHALNKHMNEHFSN--YVCETCGLGFVDKGRFVMHQQRH 513
L+ RC LC F H L +H+ H + YVCE C F H+QR+
Sbjct: 468 LSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLKRFNRLDALNRHKQRN 522
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 53.2 bits (122), Expect = 4e-08
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = -2
Query: 248 KDFRYECQCCGQKFFTRFALNNHMPTHTGERNFKCKV--CEKSYPRLKTLKDHMRIHTND 75
K F + CG+K+ L H+ TH+ ER F C C K++ R LK H R HTN
Sbjct: 21 KIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNV 80
Query: 74 RRYRCHI--CGQAFIQNCSLKGHMK 6
+ + CH C F L+ H++
Sbjct: 81 KPFSCHYDGCDAQFYTQQHLERHIE 105
Score = 52.8 bits (121), Expect = 5e-08
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 17/220 (7%)
Frame = -2
Query: 614 LNKHMNEHFSNYVC--ETCGLGFVDKGRFVMHQQRHEQGA-FPC--ESCGKVFKAEYNRD 450
++K + + + C + C F + H + H + + C E C + F
Sbjct: 72 IHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLR 131
Query: 449 LHVDRVHRKRGRVYCPKCDVKL-MSYPQKLKHLVEVHGEQPMSFPCT--MC--DKVCETR 285
H+ H C D +L + QKL++ V E+ +S+ C C + E
Sbjct: 132 SHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKW 191
Query: 284 RTLTIHWRKDHLKDFRYECQCCGQKFFTRFALNNHMPTHTG----ERNFKCKV--CEKSY 123
L H R+ H+ C CG++F T L +H+ H + + C + C+KS+
Sbjct: 192 SQLQNHIREAHVPS----CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSF 247
Query: 122 PRLKTLKDHMR-IHTNDRRYRCHICGQAFIQNCSLKGHMK 6
R LK H+ IH + + C CG F L+ H++
Sbjct: 248 TRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLE 287
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 167 TGERNFKC--KVCEKSYPRLKTLKDHMRIHTNDRRYRCHI--CGQAFIQNCSLKGHMK 6
+ ++ F C + C K Y R L+ H+R H+N+R + C C +AF + LK H +
Sbjct: 18 SAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKR 75
Score = 37.9 bits (84), Expect = 0.001
Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 18/184 (9%)
Frame = -2
Query: 644 CNXVFPYFHALNKHMNE---HFSNYVC--ETCGLGFVDKGRFVMHQQR-HEQ---GAFPC 492
C+ F L H++ H Y C + C L F K + H R HE+ + P
Sbjct: 120 CDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPH 179
Query: 491 ESC--GKVFKAEYNRDLHVDRVHRKRGRVYCPKCDV--KLMSYPQKLKHLVEVHG---EQ 333
ESC + F+ H+ H P C + + L+H V +H E+
Sbjct: 180 ESCVGHEGFEKWSQLQNHIREAH-------VPSCSICGRQFKTAAHLRHHVVLHQTTLEE 232
Query: 332 PMSFPCTM--CDKVCETRRTLTIHWRKDHLKDFRYECQCCGQKFFTRFALNNHMPTHTGE 159
++ C M C K L H H + + C CG KF + L H+ T +
Sbjct: 233 RKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCK 292
Query: 158 RNFK 147
+ K
Sbjct: 293 KAHK 296
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 236 YECQCCGQKFFTRFALNNHMPTHTGERNFKCKV--CEKSYPRLKTLKDHMRIHTN 78
Y+C C + F+ H+ THTGE+ C C K + R L H RIHTN
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTN 80
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 158 RNFKCKVCEKSYPRLKTLKDHMRIHTNDRRYRCHI--CGQAFIQNCSLKGHMK 6
R +KC +C K++ RL+ H+R HT ++ + C C + F ++ L H +
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHAR 76
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = -2
Query: 233 ECQCCGQKFFTRFALNNHMPTHTGERNFKCKV--CEKSYPRLKTLKDHMR-IHTND 75
+C G +RFAL H+ +HTGE+ F C V C++S+ R L HMR +H D
Sbjct: 79 DCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEAD 134
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = -2
Query: 179 MPTHTGERNFKCKVCEKSYPRLKTLKDHMR-IHTNDRRYRCHICGQAFIQNCSLKGH 12
+P G ++F C C K + R + L+ H+R +HT+++ + C ICG+ F + +L+ H
Sbjct: 414 VPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH 469
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 236 YECQCCGQKFFTRFALNNHMPT-HTGERNFKCKVCEKSYPRLKTLKDHMRIHTN 78
+ C C +KF L H+ + HT E+ F C +C K + R L+ H R+H N
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVN 475
Score = 30.3 bits (65), Expect = 0.28
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 326 SFPCTMCDKVCETRRTLTIHWRKDHLKDFRYECQCCGQKFFTRFALNNHMPTH 168
SF C C K + L H R H + + C CG++F R L H H
Sbjct: 422 SFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLH 473
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -2
Query: 215 QKFFTRFALNNHMPTHT-GERNFKCKV--CEKSYPRLKTLKDHMRIHTNDRRYRCHICGQ 45
++ FT L H G+ F C C KS+ R + L+ H R H N + + C C +
Sbjct: 4 EESFTEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNR 63
Query: 44 AFIQNCSLKGHMK 6
AF ++ L H++
Sbjct: 64 AFARSDVLNRHVQ 76
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = -2
Query: 290 TRRTLTIHWRKDHLKDFRYECQC--CGQKFFTRFALNNHMPTHTGERNFKCKVCEKSYPR 117
T + L R L D R+ C C + F + L H TH + F C C +++ R
Sbjct: 8 TEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFAR 67
Query: 116 LKTLKDHMR 90
L H++
Sbjct: 68 SDVLNRHVQ 76
Score = 29.5 bits (63), Expect = 0.49
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -2
Query: 566 CGLGFVDKGRFVMHQQRHEQ-GAFPCESCGKVFKAEYNRDLHVDRVHRKR 420
C F K H++ HE AF C C + F + HV ++H ++
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQK 82
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -2
Query: 437 RVHRKRG-RVYC--PKCDVKLMSYPQKLKHLVEVHGEQPMSFPCTMCDKVCETRRTLTIH 267
R HR R YC P C K + + L+ H E +F C+ C++ L H
Sbjct: 17 RAHRLGDPRFYCTYPDCP-KSFTRKEHLRRHERTH-ENVKAFSCSFCNRAFARSDVLNRH 74
Query: 266 WRKDHLK 246
++ HL+
Sbjct: 75 VQQMHLQ 81
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -2
Query: 239 RYECQCCGQKFFTRFALNNHMPTHTGERNFKCKV--CEKSYPRLKTLKDHMRIH 84
RY C C Q F +L H +HTGER F C C K++ ++ H RIH
Sbjct: 467 RYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 152 FKCKVCEKSYPRLKTLKDHMRIHTNDRRYRCHI--CGQAFIQNCSLKGHMK 6
++C C + + R +LK H HT +R + C CG+AF +++ H +
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQR 518
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 236 YECQCCGQKFFTRFALNNHMPTHTGERNFKCKV--CEKSYPRLKTLKDHMRIH 84
YEC C + F + H+ +HTGE+ F+C C+K + R L H+R H
Sbjct: 4 YECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 158 RNFKCKVCEKSYPRLKTLKDHMRIHTNDRRYRCHI--CGQAFIQNCSLKGHMKS 3
++++C C++ + R + H+R HT ++ + C C + F + L H+++
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRT 55
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 164 GERNFKCKV--CEKSYPRLKTLKDHMRIHTNDRRYRCHICGQAFIQNCSLKGHM 9
G+ +KC C KS+ R + + H R HTN + + C C +F ++ L H+
Sbjct: 13 GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHV 66
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -2
Query: 245 DFRYEC--QCCGQKFFTRFALNNHMPTHTGERNFKCKVCEKSYPRLKTLKDHM---RIHT 81
D RY+C Q C + F + H +HT + F C C S+ R L H+ +
Sbjct: 14 DIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQ 73
Query: 80 NDRRYRCH 57
ND + H
Sbjct: 74 NDAGSQTH 81
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 38.3 bits (85), Expect = 0.001
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -2
Query: 158 RNFKCKVCEKSYPRLKTLKDHMRIHTNDRRYRC 60
+ + C+ C +++ RL+ LK H+R HTN++ + C
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Frame = -2
Query: 239 RYECQCCGQKFFTRFALNNHMPTHTGERNFKCKV-------CEKSYPRLKTLKDH-MRIH 84
+Y C+ C + F L H+ +HT E+ F C C + + R L H +IH
Sbjct: 69 QYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH 128
Query: 83 TNDRRYR 63
N + R
Sbjct: 129 RNPQPRR 135
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Frame = -2
Query: 581 YVCETCGLGFVDKGRFVMHQQRH-EQGAFPCE-------SCGKVFKAEYNRDLHVDRVHR 426
YVCETC F H + H + F C CG+ F H ++HR
Sbjct: 70 YVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHR 129
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -2
Query: 500 FPCESCGKVFKAEYNRDLHVDRVHRKRGRVYCPKCDVKLMSYPQKLKHLVEVHGEQ 333
FPC+ C K F N H H K + CP C++K +H+ H ++
Sbjct: 31 FPCDQCAKRFTRHENLTRH-KACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Score = 32.7 bits (71), Expect = 0.053
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = -2
Query: 236 YECQCCGQKFFTRFALNNHMPTHTGERNFKCKVCEKSYPRLKTLKDHMRIHTNDR 72
+ C C ++F L H H+ C CE R LK H++ ND+
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -2
Query: 161 ERNFKCKVCEKSYPRLKTLKDHMRIHTNDRRYRCHICGQAFIQNCSLKGHMK 6
+R F C C K + R + L H H+ C C + LK H++
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQ 79
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.2 bits (55), Expect(2) = 0.034
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 245 DFRYECQCCGQKFFTRFALNNHM 177
+F C+ C +KF++ A ++HM
Sbjct: 67 EFYQNCEVCNKKFYSEGAYSSHM 89
Score = 25.8 bits (54), Expect(2) = 0.034
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -2
Query: 326 SFPCTMCDKVCETRRTLTIHWRKD 255
SF CT C + IHW+ D
Sbjct: 4 SFACTTCTVAFNNAESQKIHWKSD 27
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Frame = -2
Query: 530 MHQQRHEQGAFPCESCGKVFKAEYNRDLHVDRV----HRKRGRV----YCPKCDVKLMSY 375
++ +R A P SC + + E ++ + H G + YCP + K+ +
Sbjct: 245 LNLERDFSPALPQRSCYRTYTTELTHEIVRKNLAFAPHMLAGDILSPRYCPSLEAKVTRF 304
Query: 374 PQKLKHLV--EVHGEQPMSF 321
P K +HL+ E G P S+
Sbjct: 305 PHKARHLIWLEPEGLDPNSW 324
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 375 PAEAEASGRGTRRATHVVSLHYVR*SMRDATHPH--DTLEEGPLEGFQIRMPVLRSEVLH 202
P E E S H + +V+ +D H + D +EGP++ +I +L +EVL
Sbjct: 143 PLEVEGSEEDVETDLHFIC--FVKGKSKDDNHFYELDGRQEGPVQHSEIESDLLNAEVLS 200
Query: 201 EVRS 190
+++
Sbjct: 201 VIKN 204
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 593 HFSNYVCETCGLGFVDKGRFVMHQQ 519
++ Y C+ CG + KG V+H +
Sbjct: 107 YWGKYACQNCGTSYCSKGCEVIHSE 131
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 152 FKCKVCEKSYPRLKTLKDHMRIHTN 78
++C+VC K Y L LK H R H++
Sbjct: 399 YRCEVCSKRYKNLNGLKYH-RTHSH 422
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 491 ESCGKVFKAEYNRDLHVDRVHRKRGRVY-CPKC-DVKLMS-YPQKLKHLVEVHG 339
E C VF Y+ H D +H K V+ C C D + S + ++HL HG
Sbjct: 583 EICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKHG 636
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 122 PRLKTLKDHMRIHTNDRRYRCHICGQAFIQNCSLKGHMK 6
PR+ L D R+ T DR+++C CG+ GH++
Sbjct: 50 PRVGGLLDP-RLGTIDRQFKCQTCGETMADCPGHFGHIE 87
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = -2
Query: 191 LNNHMPTHTGERNFKCKVCEKSYPRLKTLKDHMRIHTNDRRYRCHICG 48
+ + M + + C C K + L D + + TN+ + C++CG
Sbjct: 123 VEDRMRNDFDSKGYVCPFCNKKFSSL----DVLSLVTNEGTFACNVCG 166
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = -2
Query: 662 EIRCALCNXVFPYFHALNKHMNEHFSNYVCETCGLGFVDKGRFVMHQQR--HEQGAFPCE 489
E+RC C V L H + +NY C F++ R++ + + +G F C
Sbjct: 231 ELRCKKCRFVLASSDYLVSHEPKDENNYSHTRCTHYFLEPIRWMQPELELGNLEGRFDCP 290
Query: 488 SC 483
C
Sbjct: 291 KC 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,584
Number of Sequences: 5004
Number of extensions: 52044
Number of successful extensions: 226
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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