Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k12
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 34 0.016
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 33 0.037
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 33 0.037
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.086
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.15
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.20
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 30 0.26
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.26
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 29 0.46
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 29 0.61
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 29 0.81
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 28 1.1
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.4
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 28 1.4
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 28 1.4
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 28 1.4
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 1.9
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 5.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.7
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 7.5
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 7.5
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 7.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.5
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 7.5
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.9
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 9.9
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.9
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 34.3 bits (75), Expect = 0.016
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Frame = -2
Query: 531 NALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE---QFELR 361
N++ +QT+ DL+ + E + +K L ++ ET KND N E +E
Sbjct: 315 NSINEIQTQNR--DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETE 372
Query: 360 LNELDAKLNMLQS----------AEKLKTAIVTES---KNGTVTFPRDITKHQHLAIFSE 220
+ E KLN ++ A++LK + ++ES K G + F +++ + L ++ E
Sbjct: 373 MKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDL-LYQE 431
Query: 219 RIDDRIKLAFVLGQERHFRKRKMRFED 139
+I IK E FRK + E+
Sbjct: 432 QIQSSIK-----DMENVFRKNEYLMEE 453
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 33.1 bits (72), Expect = 0.037
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = -2
Query: 546 FDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGN--RFE 376
F+ ++ + T G + + + IE +L ++ +S F+ T+ + K++V F
Sbjct: 559 FEQLLFSISKVTTNGPSETISEDIEEILPSLESSERSSTPFLNTNSASLKSEVVQLTTFS 618
Query: 375 QFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVT 268
F+L+L L L++LQS + + S+ G T
Sbjct: 619 DFQLKLKTLQCVLDILQSLSNWAESGLYLSRRGVST 654
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 33.1 bits (72), Expect = 0.037
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -2
Query: 507 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 328
EGE DD+ +ES + +++ +S+K + E +ND R E + + L A L +
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLA 432
Query: 327 QSA 319
A
Sbjct: 433 VDA 435
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 31.9 bits (69), Expect = 0.086
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = -2
Query: 513 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 334
+ EG++ DL KI + K KLNT ++T + + ++ E R+ L+ +LN
Sbjct: 512 ELEGKKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLN 567
Query: 333 MLQSAEKLKTAIVTESK 283
MLQ ++ AI + S+
Sbjct: 568 MLQKL-SMQPAISSSSE 583
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.1 bits (67), Expect = 0.15
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Frame = -2
Query: 573 LLKILMRLNFDNKSNALLHLQTEGERDDLRDK-----------IESVLKHVKKLNTNSEK 427
L K+L D++ LL Q E ER DL+ E+ +K ++ TNS+
Sbjct: 521 LRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQA 580
Query: 426 FMVTHETFKNDVGNRFEQFELRLNELDAKLNML 328
V+ + N++ ++ ++ +L+LNE + K L
Sbjct: 581 ECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 447 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD-AKLNMLQSAEKLKTAIVTESKN 280
L NSEKF E+ K+ V N + NE+D + N+L + +T KN
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKN 416
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 402 KNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKH 244
+ND + F+ L LNE+++++N+L+ A A +T NG + I H
Sbjct: 733 RNDTLSLFQN-SLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSH 784
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 30.3 bits (65), Expect = 0.26
Identities = 23/109 (21%), Positives = 43/109 (39%)
Frame = -2
Query: 588 ATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE 409
AT+QG +L+ +N L L E DD D+ + + ++ +
Sbjct: 317 ATRQGSFALLLFAIISLAANTALPLLLEDTEDDEEDESSDASNNEYNIQERNDLGNIRTG 376
Query: 408 TFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFP 262
T +GN E R ++ +L S+ + T I ++ + +T P
Sbjct: 377 TNTPRLGNLSETTSFRSENEPSRRRLLPSSRSIMTTISSKVQIKGLTLP 425
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 30.3 bits (65), Expect = 0.26
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 12/141 (8%)
Frame = -2
Query: 636 HKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKH 457
H + L+ + K + N D +S + +RDD ++ S L+H
Sbjct: 379 HLSNMSQKLSRVNEELVLKTKIATASSNANTDLRSRVDISESKLKKRDDKLKRVSSQLEH 438
Query: 456 VK----KLNTNSEKFMVTHETFKNDVGNRFEQ---FELRLNELDAKLNMLQ-----SAEK 313
+K + + +E +V +T + + +Q + ++N+L+ +L L S E
Sbjct: 439 LKHNYEEEKSMNENLLVRIQTLEKQNTTKSDQIVSMQFQINDLNEQLRDLMFTISASQEI 498
Query: 312 LKTAIVTESKNGTVTFPRDIT 250
K E +NGT+ P + T
Sbjct: 499 QKMGQSEELQNGTIVLPNNST 519
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 166 KMSLLAQNKSE-FDAVVDAFRKYGQMLVFGNVARKR 270
K +LL + KS+ FD V+AF KYG+ F V R +
Sbjct: 2 KTALLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHK 37
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 29.1 bits (62), Expect = 0.61
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -2
Query: 654 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRD 481
LN ++ +R +N++ T QG + + +NF NK N L E DLR
Sbjct: 114 LNFLMSGMADLQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR- 172
Query: 480 KIESVLKHVKKLNTNS 433
K V+ V +N N+
Sbjct: 173 KGAYVISPVPFINGNN 188
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 28.7 bits (61), Expect = 0.81
Identities = 23/108 (21%), Positives = 45/108 (41%)
Frame = -2
Query: 648 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIES 469
E IF K S + N + + F Q M FD N + ++ GE +++ ++
Sbjct: 109 ERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDTVQNEMTSMK--GEMAEMKVEMVE 160
Query: 468 VLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 325
+ + +LNT + E + RF + R N +D + + ++
Sbjct: 161 MKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/71 (19%), Positives = 33/71 (46%)
Frame = -2
Query: 642 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 463
I ++++ D SL ++ ++ NF +++ H ++ + +LR + +
Sbjct: 247 IIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306
Query: 462 KHVKKLNTNSE 430
KH K+ N+E
Sbjct: 307 KHAKEAQKNAE 317
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -2
Query: 495 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRLNELDAKLNM 331
D+ + ++ ++K KKL ++E+ H T K N +G F + ++ L +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267
Query: 330 LQ 325
+
Sbjct: 268 FE 269
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 648 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 529
++ FH Q+ KRD+ +L ++ T L L+ F + +N
Sbjct: 79 QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/108 (21%), Positives = 45/108 (41%)
Frame = -2
Query: 648 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIES 469
E IF K S + N + + F Q M FD N + ++ GE +++ ++
Sbjct: 109 ERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDAVQNEMTSMK--GEMAEMKVEMVE 160
Query: 468 VLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 325
+ + +LNT + E + RF + R N +D + + ++
Sbjct: 161 MKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -2
Query: 93 AIQCINEKLYDKHYKIRKIAKRVI 22
A++CIN+K +D+H KI+K+ V+
Sbjct: 57 ALKCINKKKHDEH-KIKKLRNEVL 79
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -2
Query: 471 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVT 292
+ L H+ L + H TFK++V N +EL +EL A + S+ + I T
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAASSPLYTSSSVPPSHITT 408
Query: 291 ES 286
S
Sbjct: 409 GS 410
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.7
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 543 DNKSNALLHLQTEGER--DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 370
D +SN +H ++ +DLR KI + + V K+N E +T E K + + +Q
Sbjct: 588 DIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEG--ITSEDMKKKI-DEIQQL 644
Query: 369 ELRLNE 352
L++ E
Sbjct: 645 SLKVFE 650
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 5.7
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = -2
Query: 552 LNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 373
+N N+ +HL L DK + L + K TN+ KF V ET +G Q
Sbjct: 567 INLLRDENSYVHLNVISAVVSLCDKYDDSLIRLLKEYTNTNKFTV-DETLL--IGQAIYQ 623
Query: 372 FELRLNELDAK 340
R EL AK
Sbjct: 624 TMERQGELVAK 634
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 289 FRYDGGFQFFGR---LQHVKFGVEFVQTQFKLLK--PVAHIVLERFVGDHKFFAVCIQ 447
+ YD FQ +Q+ ++ +Q FK PVA +LER+V K + CI+
Sbjct: 253 YYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYEGCIK 310
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.5
Identities = 26/118 (22%), Positives = 52/118 (44%)
Frame = -2
Query: 627 KSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKK 448
+ KR SL + K+ L K L N D+ A + + E++ L + ++S+ + +
Sbjct: 330 REKRRARSLEERMS-KEMLTK-LGESNVDDGMAASRYDTVKREKERLSEHLKSLQEQYEH 387
Query: 447 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGT 274
+ + + ++ E++ +GN+ + LNE LQ+ K + VT T
Sbjct: 388 IQSVYKNVLLDRESYIMRLGNKISENNELLNENRVLKEKLQTYLDKKESNVTSKIKST 445
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 120 DGVHPNPLLAIQCINEKLYD 61
D ++PN L ++ INEK +D
Sbjct: 5 DAINPNNLKILEVINEKCFD 24
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -2
Query: 612 LNSLGALFA-TKQGLLKI----LMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 463
+ S G L A T+ G+ + LMR +F+ L+ GE+DD + E+++
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIM 1435
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 330 LQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERID--DRIKLAF 190
+ +A LK+ I ESK P D+T+ Q +F + I R+ LA+
Sbjct: 41 VNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAY 89
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 414 HETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAI-VTESKNGTVTFPRDIT 250
HE F GN F Q +L L D + + +T+I V +S TF +D T
Sbjct: 367 HEDFIFHEGNHFRQLKLILEANDILHQLFLRGDWTETSIFVGDSIRVEATFDKDNT 422
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 221 NASTTASNSLLFWAKSDIFASEKCALKTT 135
+A T AS S W K FAS KC T
Sbjct: 663 SAVTKASTSYKVWKKKLNFASRKCVKSFT 691
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.9
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 501 ERDDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGNRFEQFELRLNELDAKLNMLQ 325
+RD+ IES L+ V KL SE F + + T K ++ R + LNE + L
Sbjct: 32 KRDEFSRDIESELEKVAKL--KSESFSLKGKITQKEELTYRLQNLAASLNEKKSLSCDLH 89
Query: 324 SAEKL 310
S ++L
Sbjct: 90 SRKQL 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,313
Number of Sequences: 5004
Number of extensions: 55808
Number of successful extensions: 202
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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