Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k12
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 40 0.002
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 35 0.068
08_01_0870 - 8491020-8491109,8491523-8491660,8492442-8492568,849... 30 1.5
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 30 1.9
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 2.6
03_02_0227 + 6576333-6577769 29 3.4
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 28 5.9
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 28 5.9
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92... 28 7.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 7.8
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 28 7.8
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 28 7.8
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 28 7.8
06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676 28 7.8
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995... 28 7.8
03_01_0146 - 1161005-1161133,1161239-1161283,1161369-1161469,116... 28 7.8
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = -2
Query: 612 LNSLGALFATKQGLLKIL-MRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTN 436
+ SL FA +Q + L + LN N S ++ + E D L++ ++++ + V +N
Sbjct: 132 MKSLQEAFAVQQARSESLSLALNGQNSSEDVI-VALENHNDYLKEVVDNLRQAVSIINRK 190
Query: 435 SEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTV 271
EK++ E FKN+ + + EL+ + L+ + + + ++ G++
Sbjct: 191 HEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQTGGGSL 245
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 34.7 bits (76), Expect = 0.068
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = -2
Query: 513 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 334
+ E DL DKI + K L + ++ + + ND+ +FEQ + + + + +L
Sbjct: 709 ELESTNGDLNDKIAVLQKEGSSLASELQQLEASFKNLGNDLEQKFEQISV-MQKNNEELE 767
Query: 333 MLQSAEKLKTAIVTESKNGTV 271
+ S + + A+V E KN V
Sbjct: 768 LANSNLQNELAMVQEQKNEAV 788
>08_01_0870 -
8491020-8491109,8491523-8491660,8492442-8492568,
8492667-8492801,8493262-8493731
Length = 319
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = -2
Query: 528 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNEL 349
+L + E +RD + + +++L + +K T + E FKNDV +Q E ++ +
Sbjct: 166 SLRRAEVEEKRDKVHKESKALLDYTRKAITKLTELKKMLEKFKNDVEK--QQAE-QMTDW 222
Query: 348 DAKLNMLQSAEK 313
KL M+ S E+
Sbjct: 223 QTKLVMMDSKER 234
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -2
Query: 528 ALLHLQTEGERDDLRDKIESVLKHVK-KLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 352
AL L+T E D L+ + ++ + + + F+V + +++ F+ F +L +
Sbjct: 107 ALEMLETVEELDPLQKEWRDTVRELAYDIEDCIDPFLVLVDQKQDEQSTFFKGFSYKLKK 166
Query: 351 LDAKLNMLQSAEKLKTAIVTESK 283
+ A+ + E+LKT ++ SK
Sbjct: 167 MKARHEISNEIEELKTRVIEASK 189
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 456 HVLKQIQFCRANHHARLQFEGAATRCFCCQ 545
H+LK++ C+ +H R QFE FCC+
Sbjct: 243 HLLKKVPDCKHSHAIRFQFESPG---FCCR 269
>03_02_0227 + 6576333-6577769
Length = 478
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = -2
Query: 273 VTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHPNPLL 94
V PR + F + DR+ ++ GQ+++F R R+ V+ V P P +
Sbjct: 5 VPLPRRPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERY--GSTVVRINVPPGPFM 62
Query: 93 A-----IQCINEKLYDKHYKIRKIAKR 28
A + ++ K + + + K+ KR
Sbjct: 63 ARDPRVVALLDAKSFPVLFDVAKVEKR 89
>03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/91 (24%), Positives = 43/91 (47%)
Frame = -2
Query: 480 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTA 301
++E L+ + SEK ET + ++ E R EL+ ++ +LQS ++ TA
Sbjct: 816 ELEKSLEELTSKLVASEKSNSLAETQLKCMAESYKSLESRKAELENEIKVLQSKIEVLTA 875
Query: 300 IVTESKNGTVTFPRDITKHQHLAIFSERIDD 208
+ + + DIT+++ L ER ++
Sbjct: 876 ELDDERQ---NHQEDITRYRDLEEKIERYEN 903
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 313 FFGRLQHVKFGVEFVQTQFKLLKPVAHIVLER 408
FFG L H+K +E FKLL ++ LER
Sbjct: 27 FFGSLSHLKNDLECYLISFKLLPKYRNLHLER 58
>12_01_0121 -
920988-921296,921556-921620,921874-921923,922009-922106,
923832-923867,925351-925731,925839-926324,926471-926647
Length = 533
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 182 PKTKASLMRSSMRSE-NMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSS 355
PK + ++ + S++ + CW M RGN +P +L+ MA N + C+ ++L +S
Sbjct: 71 PKLRPAIQKDSVKQFFQVYNCWSGFMGRGNFLLPDILT-NMANEN-ALRCARVALQGTS 127
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = -2
Query: 495 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 316
DD+ +IES+L + S++F V ++ N V + E+ + EL+ + L+ E
Sbjct: 372 DDMLSEIESLLSGEIDIPLPSDRFDVKERSWYNSVNSELERLRGLVRELEEREVKLE-GE 430
Query: 315 KLKTAIVTESKNGTVTFPRDI 253
L+ + E + V R +
Sbjct: 431 LLEYYGLKEQETDVVELHRQL 451
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/95 (22%), Positives = 48/95 (50%)
Frame = -2
Query: 405 FKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIF 226
F+NDV E+FE+R +E+ K+ + ++ + ++ + + T + +++ F
Sbjct: 393 FRNDVE---EKFEMRNHEMQLKIRAWEKTQQFRIEMMADKRAAKKTKALQDMEERYIQDF 449
Query: 225 SERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLY 121
I D++ + Q+ +F+K K+ DD+ + Y
Sbjct: 450 M-NIVDKLDVPEYF-QQAYFQKFKV--PDDIRLRY 480
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = +1
Query: 61 IVEFFVNTLNC---QQGIWVHTVIEHFHVVFKAH--FSLAKMSLLAQNKSEFDAVVDAFR 225
+ EF ++TL + +++ EHF+VV+K H F + + + +N VD+
Sbjct: 349 VTEFGLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFFVLESDVGFRNYQNIWRSVDSPG 408
Query: 226 KYGQMLVFGNVARKRHRAIFAFRY-DGGFQFFGRLQH 333
+ G ++ ++R +H + + Y +G Q F + H
Sbjct: 409 ESGVLVHDITISRDQHSVLKSGNYFEGAKQSFKKKPH 445
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = +1
Query: 61 IVEFFVNTLNC---QQGIWVHTVIEHFHVVFKAH--FSLAKMSLLAQNKSEFDAVVDAFR 225
+ EF ++TL + +++ EHF+VV+K H F + + + +N VD+
Sbjct: 349 VTEFGLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFFVLESDVGFRNYQNIWRSVDSPG 408
Query: 226 KYGQMLVFGNVARKRHRAIFAFRY-DGGFQFFGRLQH 333
+ G ++ ++R +H + + Y +G Q F + H
Sbjct: 409 ESGVLVHDITISRDQHSVLKSGNYFEGAKQSFKKKPH 445
>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
Length = 964
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 336 NMLQSAEKLKTA-IVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKL 196
+M KL+ +VT + + T +FP I K +HL S + + +KL
Sbjct: 619 DMFTRLRKLRVLHLVTATTSNTFSFPASIEKLKHLRYLSLQTGEAVKL 666
>03_02_0628 +
9957385-9957888,9957985-9958111,9958541-9958608,
9958695-9958772,9958885-9958949,9959130-9959196,
9959344-9959526,9959690-9959746,9959857-9959952,
9960061-9960219
Length = 467
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = -2
Query: 639 FHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNK--SNALLHLQTEGE--RDDLRDKIE 472
+HK ++RD L + A K+ L + NK + TEG+ R +L DK
Sbjct: 196 YHKVVAERDAGKLLSSIAVKEKLESLCREFQRQNKMLKEECRRVSTEGQNMRMELSDKFN 255
Query: 471 SVLKHV 454
+ +K V
Sbjct: 256 NAIKDV 261
>03_01_0146 -
1161005-1161133,1161239-1161283,1161369-1161469,
1161585-1161691,1161823-1161924,1162028-1162250,
1162343-1162382
Length = 248
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = -2
Query: 549 NFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 370
N DN+ L E+DD DK+E + K + + + H +D+ + E+
Sbjct: 142 NMDNREIIELQRNVIKEQDDELDKLEETIVSTKHIALAINEELDLHTRLIDDLDEKTEET 201
Query: 369 ELRLNELDAKL 337
+L KL
Sbjct: 202 SNQLQRAQKKL 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,209,960
Number of Sequences: 37544
Number of extensions: 345135
Number of successful extensions: 1054
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -