Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k12
(673 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC031603-1|AAH31603.1| 422|Homo sapiens ALS2CR12 protein protein. 36 0.13
U25725-1|AAA86889.1| 1017|Homo sapiens AH antigen protein. 36 0.17
U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein. 35 0.23
U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protei... 35 0.23
AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F, 3... 35 0.23
AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F, 3... 35 0.23
AY396742-1|AAR91620.1| 784|Homo sapiens repetin protein. 34 0.40
AY219924-1|AAP48705.1| 784|Homo sapiens repetin protein. 34 0.40
U53445-1|AAA98972.1| 752|Homo sapiens DOC1 protein. 33 1.2
BC027860-1|AAH27860.1| 893|Homo sapiens filamin A interacting p... 33 1.2
AY642382-1|AAV34207.1| 1135|Homo sapiens GPBP-interacting protei... 33 1.2
AF514869-1|AAQ08179.1| 1133|Homo sapiens GPBP-interacting protei... 33 1.2
AF514868-1|AAQ08178.1| 1133|Homo sapiens GPBP-interacting protei... 33 1.2
AF514867-1|AAQ08177.1| 1135|Homo sapiens GPBP-interacting protei... 33 1.2
AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain dy... 33 1.2
AF329092-1|AAN16206.1| 764|Homo sapiens GPBP-interacting protei... 33 1.2
L40157-1|AAA79121.1| 1410|Homo sapiens endosome-associated prote... 32 2.1
AC007256-2|AAY24226.1| 445|Homo sapiens unknown protein. 32 2.1
AB053314-1|BAB69022.1| 445|Homo sapiens ALS2CR12 protein. 32 2.1
U80759-1|AAB91450.1| 182|Homo sapiens CAGH4 alternate open read... 31 2.8
U27109-1|AAC52065.1| 1228|Homo sapiens prepromultimerin protein. 31 2.8
BC063848-1|AAH63848.1| 1228|Homo sapiens multimerin 1 protein. 31 2.8
AC093759-2|AAY40957.1| 1228|Homo sapiens unknown protein. 31 2.8
AL512506-1|CAI16114.1| 273|Homo sapiens novel protein protein. 31 3.8
BC033900-1|AAH33900.1| 335|Homo sapiens NDE1 protein protein. 31 5.0
BC001421-1|AAH01421.1| 335|Homo sapiens nudE nuclear distributi... 31 5.0
AK000108-1|BAA90949.1| 335|Homo sapiens protein ( Homo sapiens ... 31 5.0
X67482-1|CAA47824.1| 427|Homo sapiens HL-60 1,25-dihydroxyvitam... 30 8.7
J03258-1|AAA61273.1| 427|Homo sapiens VDR protein. 30 8.7
BC060832-1|AAH60832.1| 427|Homo sapiens VDR protein protein. 30 8.7
AY342401-1|AAP88938.1| 424|Homo sapiens vitamin D (1,25-dihydro... 30 8.7
AF026260-1|AAB95155.1| 427|Homo sapiens vitamin D receptor prot... 30 8.7
AB002168-1|BAA83389.1| 427|Homo sapiens vitamin D receptor prot... 30 8.7
>BC031603-1|AAH31603.1| 422|Homo sapiens ALS2CR12 protein protein.
Length = 422
Score = 35.9 bits (79), Expect = 0.13
Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 11/222 (4%)
Frame = -2
Query: 672 SDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERD 493
SD ++E+ ++ RD S L +++ L M+ NF+NK+ L E E
Sbjct: 128 SDLEEQISELTAIIEQMNRDHQSAQKLLSSEMDLRCAEMKQNFENKNRELKEAH-EAELS 186
Query: 492 DLRDKIESVLKHVK-----KLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 328
+L + ++ LK K KL +++ F+ + +++ E + ++ AK
Sbjct: 187 ELENNYKAALKAEKLAAQEKLEEMGKEYKYLKNMFRTYQDSIYDEMEEKWSKQKAKWKKD 246
Query: 327 QSAEKLKTAIVTESKNGTVTFPRDITKHQH------LAIFSERIDDRIKLAFVLGQERHF 166
+ E+ + ++ + K T F + + A+F I ++ +L L Q +
Sbjct: 247 EKFER-ENILLQQKKKMTKKFEMESGEEDKKINESCSAVFENFIQEKEEL---LKQHQSD 302
Query: 165 RKRKMRFEDDMEVLYDGVHPNPLLAIQCINEKLYDKHYKIRK 40
+ EV+ + +H L+ ++ +N LY +++K
Sbjct: 303 TLQLEELRKTKEVMQEELHAQALI-LESLNTNLYYTQLELQK 343
>U25725-1|AAA86889.1| 1017|Homo sapiens AH antigen protein.
Length = 1017
Score = 35.5 bits (78), Expect = 0.17
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Frame = -2
Query: 582 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 418
++G+ K+ +R+ D K LH+ + +GE D L+DK+E++ + ++ N E ++
Sbjct: 21 RRGIEKLRVRIEADEKKQ--LHIAEKLKERDGENDSLKDKVENLERELQMSEENQELVIL 78
Query: 417 THETFKNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESK 283
E K +V + E+ L + L L+S ++ T + E +
Sbjct: 79 DAENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQ 126
>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
Length = 3113
Score = 35.1 bits (77), Expect = 0.23
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Frame = -2
Query: 582 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 418
++G+ K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++
Sbjct: 2117 RRGIEKLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVIL 2174
Query: 417 THETFKNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITK 247
E K +V + E+ L + L L+S ++ T + E + + ++
Sbjct: 2175 DAENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSS 2234
Query: 246 HQHLAIFSERIDDRIK 199
+ L E+ + +IK
Sbjct: 2235 FKSLLEEKEQAEIQIK 2250
>U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protein
protein.
Length = 3210
Score = 35.1 bits (77), Expect = 0.23
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Frame = -2
Query: 582 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 418
++G+ K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++
Sbjct: 2214 RRGIEKLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVIL 2271
Query: 417 THETFKNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITK 247
E K +V + E+ L + L L+S ++ T + E + + ++
Sbjct: 2272 DAENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSS 2331
Query: 246 HQHLAIFSERIDDRIK 199
+ L E+ + +IK
Sbjct: 2332 FKSLLEEKEQAEIQIK 2347
>AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 35.1 bits (77), Expect = 0.23
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Frame = -2
Query: 582 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 418
++G+ K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++
Sbjct: 2118 RRGIEKLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVIL 2175
Query: 417 THETFKNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITK 247
E K +V + E+ L + L L+S ++ T + E + + ++
Sbjct: 2176 DAENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSS 2235
Query: 246 HQHLAIFSERIDDRIK 199
+ L E+ + +IK
Sbjct: 2236 FKSLLEEKEQAEIQIK 2251
>AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 35.1 bits (77), Expect = 0.23
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Frame = -2
Query: 582 KQGLLKILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV 418
++G+ K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++
Sbjct: 2118 RRGIEKLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVIL 2175
Query: 417 THETFKNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITK 247
E K +V + E+ L + L L+S ++ T + E + + ++
Sbjct: 2176 DAENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSS 2235
Query: 246 HQHLAIFSERIDDRIK 199
+ L E+ + +IK
Sbjct: 2236 FKSLLEEKEQAEIQIK 2251
>AY396742-1|AAR91620.1| 784|Homo sapiens repetin protein.
Length = 784
Score = 34.3 bits (75), Expect = 0.40
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 364 AFERTRRQT*HAAVGRKIENRHRNGKQKWHGDVSA-RHYQTPAFGHIFGTHRRPHQTRFC 188
+F+++ RQ+ ++ G+K+ ++ +G+ KW G + A + P +G R Q
Sbjct: 193 SFDQSERQSQDSSSGKKVSHKSTSGQAKWQGHIFALNRCEKPIQDSHYGQSERHTQQSET 252
Query: 187 FGPRATFSQ 161
G + F+Q
Sbjct: 253 LGQASHFNQ 261
>AY219924-1|AAP48705.1| 784|Homo sapiens repetin protein.
Length = 784
Score = 34.3 bits (75), Expect = 0.40
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 364 AFERTRRQT*HAAVGRKIENRHRNGKQKWHGDVSA-RHYQTPAFGHIFGTHRRPHQTRFC 188
+F+++ RQ+ ++ G+K+ ++ +G+ KW G + A + P +G R Q
Sbjct: 193 SFDQSERQSQDSSSGKKVSHKSTSGQAKWQGHIFALNRCEKPIQDSHYGQSERHTQQSET 252
Query: 187 FGPRATFSQ 161
G + F+Q
Sbjct: 253 LGQASHFNQ 261
>U53445-1|AAA98972.1| 752|Homo sapiens DOC1 protein.
Length = 752
Score = 32.7 bits (71), Expect = 1.2
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Frame = -2
Query: 654 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGER-DDLRDK 478
L + F ++ L +L +F ++ + ++ D A LQ E + + +K
Sbjct: 225 LEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEK 284
Query: 477 IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNM----LQSAEK- 313
+ K K T+ E+ M + ++D+ N+ + E + N+L +++NM LQS E
Sbjct: 285 LIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAI 344
Query: 312 ----LKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIK 199
LK + +S T ++ K + L+ ER+ ++K
Sbjct: 345 EKDFLKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLK 386
>BC027860-1|AAH27860.1| 893|Homo sapiens filamin A interacting
protein 1-like protein.
Length = 893
Score = 32.7 bits (71), Expect = 1.2
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Frame = -2
Query: 654 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGER-DDLRDK 478
L + F ++ L +L +F ++ + ++ D A LQ E + + +K
Sbjct: 239 LEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEK 298
Query: 477 IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNM----LQSAEK- 313
+ K K T+ E+ M + ++D+ N+ + E + N+L +++NM LQS E
Sbjct: 299 LIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAI 358
Query: 312 ----LKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIK 199
LK + +S T ++ K + L+ ER+ ++K
Sbjct: 359 EKDFLKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLK 400
>AY642382-1|AAV34207.1| 1135|Homo sapiens GPBP-interacting protein
130d protein.
Length = 1135
Score = 32.7 bits (71), Expect = 1.2
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Frame = -2
Query: 654 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGER-DDLRDK 478
L + F ++ L +L +F ++ + ++ D A LQ E + + +K
Sbjct: 479 LEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEK 538
Query: 477 IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNM----LQSAEK- 313
+ K K T+ E+ M + ++D+ N+ + E + N+L +++NM LQS E
Sbjct: 539 LIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAI 598
Query: 312 ----LKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIK 199
LK + +S T ++ K + L+ ER+ ++K
Sbjct: 599 EKDFLKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLK 640
>AF514869-1|AAQ08179.1| 1133|Homo sapiens GPBP-interacting protein
130c protein.
Length = 1133
Score = 32.7 bits (71), Expect = 1.2
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Frame = -2
Query: 654 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGER-DDLRDK 478
L + F ++ L +L +F ++ + ++ D A LQ E + + +K
Sbjct: 479 LEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEK 538
Query: 477 IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNM----LQSAEK- 313
+ K K T+ E+ M + ++D+ N+ + E + N+L +++NM LQS E
Sbjct: 539 LIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAI 598
Query: 312 ----LKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIK 199
LK + +S T ++ K + L+ ER+ ++K
Sbjct: 599 EKDFLKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLK 640
>AF514868-1|AAQ08178.1| 1133|Homo sapiens GPBP-interacting protein
130b protein.
Length = 1133
Score = 32.7 bits (71), Expect = 1.2
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Frame = -2
Query: 654 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGER-DDLRDK 478
L + F ++ L +L +F ++ + ++ D A LQ E + + +K
Sbjct: 479 LEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEK 538
Query: 477 IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNM----LQSAEK- 313
+ K K T+ E+ M + ++D+ N+ + E + N+L +++NM LQS E
Sbjct: 539 LIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAI 598
Query: 312 ----LKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIK 199
LK + +S T ++ K + L+ ER+ ++K
Sbjct: 599 EKDFLKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLK 640
>AF514867-1|AAQ08177.1| 1135|Homo sapiens GPBP-interacting protein
130a protein.
Length = 1135
Score = 32.7 bits (71), Expect = 1.2
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Frame = -2
Query: 654 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGER-DDLRDK 478
L + F ++ L +L +F ++ + ++ D A LQ E + + +K
Sbjct: 479 LEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEK 538
Query: 477 IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNM----LQSAEK- 313
+ K K T+ E+ M + ++D+ N+ + E + N+L +++NM LQS E
Sbjct: 539 LIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAI 598
Query: 312 ----LKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIK 199
LK + +S T ++ K + L+ ER+ ++K
Sbjct: 599 EKDFLKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLK 640
>AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain dynein
type 3 protein.
Length = 4116
Score = 32.7 bits (71), Expect = 1.2
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = -2
Query: 546 FDNKSNALLHLQTEGERDDLRDKIESVLK---HVKKLNTNSEKFMVTHETFKNDVGNRFE 376
FDN N LLH + + E D ++ E L+ + ++L + ++ ++T E K++V +
Sbjct: 768 FDNSRNLLLHKRDQAEMDLIKRCSEFELRLEGYHRELESFRKREVMTTEEMKHNV-EKLN 826
Query: 375 QFELRLNELDAKLNMLQSAEKL 310
+ LN A+ ++ E+L
Sbjct: 827 ELSKNLNRAFAEFELINKEEEL 848
>AF329092-1|AAN16206.1| 764|Homo sapiens GPBP-interacting protein
90 protein.
Length = 764
Score = 32.7 bits (71), Expect = 1.2
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Frame = -2
Query: 654 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGER-DDLRDK 478
L + F ++ L +L +F ++ + ++ D A LQ E + + +K
Sbjct: 479 LEKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEK 538
Query: 477 IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNM----LQSAEK- 313
+ K K T+ E+ M + ++D+ N+ + E + N+L +++NM LQS E
Sbjct: 539 LIEETKRALKSKTDVEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRLQSLEAI 598
Query: 312 ----LKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIK 199
LK + +S T ++ K + L+ ER+ ++K
Sbjct: 599 EKDFLKNKLNQDSGKSTTALHQENNKIKELSQEVERLKLKLK 640
>L40157-1|AAA79121.1| 1410|Homo sapiens endosome-associated protein
protein.
Length = 1410
Score = 31.9 bits (69), Expect = 2.1
Identities = 24/101 (23%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Frame = -2
Query: 498 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD----AKLNM 331
+++L D+++ H++ ++ +++ ET N++ ++ + + ++++LD AK +
Sbjct: 595 QENLHDQVQEQKAHLRA----AQDRVLSLETSVNELNSQLNESKEKVSQLDIQIKAKTEL 650
Query: 330 LQSAEKLKTAIVTESKNGTVTFPRDI-TKHQHLAIFSERID 211
L SAE KTA + +N T + KHQ L + ++D
Sbjct: 651 LLSAEAAKTAQRADLQNHLDTAQNALQDKHQELNKITTQLD 691
>AC007256-2|AAY24226.1| 445|Homo sapiens unknown protein.
Length = 445
Score = 31.9 bits (69), Expect = 2.1
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Frame = -2
Query: 672 SDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERD 493
SD ++E+ ++ RD S L +++ L M+ NF+NK+ L E E
Sbjct: 128 SDLEEQISELTAIIEQMNRDHQSAQKLLSSEMDLRCAEMKQNFENKNRELKEAH-EAELS 186
Query: 492 DLRDKIESVLKHVK-----KLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 328
+L + ++ LK K KL +++ F+ + +++ E + ++ AK
Sbjct: 187 ELENNYKAALKAEKLAAQEKLEEMGKEYKYLKNMFRTYQDSIYDEMEEKWSKQKAKWKKD 246
Query: 327 QSAEKLKTAIVTESKNGTVTF 265
+ E+ + ++ + K T F
Sbjct: 247 EKFER-ENILLQQKKKMTKKF 266
>AB053314-1|BAB69022.1| 445|Homo sapiens ALS2CR12 protein.
Length = 445
Score = 31.9 bits (69), Expect = 2.1
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Frame = -2
Query: 672 SDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERD 493
SD ++E+ ++ RD S L +++ L M+ NF+NK+ L E E
Sbjct: 128 SDLEEQISELTAIIEQMNRDHQSAQKLLSSEMDLRCAEMKQNFENKNRELKEAH-EAELS 186
Query: 492 DLRDKIESVLKHVK-----KLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 328
+L + ++ LK K KL +++ F+ + +++ E + ++ AK
Sbjct: 187 ELENNYKAALKAEKLAAQEKLEEMGKEYKYLKNMFRTYQDSIYDEMEEKWSKQKAKWKKD 246
Query: 327 QSAEKLKTAIVTESKNGTVTF 265
+ E+ + ++ + K T F
Sbjct: 247 EKFER-ENILLQQKKKMTKKF 266
>U80759-1|AAB91450.1| 182|Homo sapiens CAGH4 alternate open reading
frame protein.
Length = 182
Score = 31.5 bits (68), Expect = 2.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 638 FTSRNPNAISTRWAHCSRPSRGC 570
FT P A W CSRP+RGC
Sbjct: 60 FTPTQPRAPRPPWTPCSRPTRGC 82
>U27109-1|AAC52065.1| 1228|Homo sapiens prepromultimerin protein.
Length = 1228
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -2
Query: 489 LRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKL 310
+R KIE++ V LN ++ H +N+V R + E R+NE L M K
Sbjct: 674 IRKKIENLTSAVNSLNFIIKELTKRHNLLRNEVQGRDDALERRINEY--ALEMEDGLNKT 731
Query: 309 KTAI 298
T I
Sbjct: 732 MTII 735
>BC063848-1|AAH63848.1| 1228|Homo sapiens multimerin 1 protein.
Length = 1228
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -2
Query: 489 LRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKL 310
+R KIE++ V LN ++ H +N+V R + E R+NE L M K
Sbjct: 674 IRKKIENLTSAVNSLNFIIKELTKRHNLLRNEVQGRDDALERRINEY--ALEMEDGLNKT 731
Query: 309 KTAI 298
T I
Sbjct: 732 MTII 735
>AC093759-2|AAY40957.1| 1228|Homo sapiens unknown protein.
Length = 1228
Score = 31.5 bits (68), Expect = 2.8
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -2
Query: 489 LRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKL 310
+R KIE++ V LN ++ H +N+V R + E R+NE L M K
Sbjct: 674 IRKKIENLTSAVNSLNFIIKELTKRHNLLRNEVQGRDDALERRINEY--ALEMEDGLNKT 731
Query: 309 KTAI 298
T I
Sbjct: 732 MTII 735
>AL512506-1|CAI16114.1| 273|Homo sapiens novel protein protein.
Length = 273
Score = 31.1 bits (67), Expect = 3.8
Identities = 16/64 (25%), Positives = 35/64 (54%)
Frame = -2
Query: 513 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 334
Q + + +L+DKI +V + + + E+ THE + ++ + ++++ L L ++N
Sbjct: 183 QVQEDITNLKDKIITVKESIIEKTCFLEEEKKTHEKLRKEIEVQHKRYDAILKRLHCQVN 242
Query: 333 MLQS 322
LQS
Sbjct: 243 KLQS 246
>BC033900-1|AAH33900.1| 335|Homo sapiens NDE1 protein protein.
Length = 335
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -2
Query: 489 LRDKIESVLKHVKKLNTNSEKF----MVTHETFKNDVGNRFEQFELRLNELDAKLNMLQS 322
++D+++ ++ +++ N + E+ +++ E F+ + E+ +ELD K N+L+S
Sbjct: 106 IKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLES 165
Query: 321 AEKLK 307
++LK
Sbjct: 166 VQRLK 170
>BC001421-1|AAH01421.1| 335|Homo sapiens nudE nuclear distribution
gene E homolog 1 (A. nidulans) protein.
Length = 335
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -2
Query: 489 LRDKIESVLKHVKKLNTNSEKF----MVTHETFKNDVGNRFEQFELRLNELDAKLNMLQS 322
++D+++ ++ +++ N + E+ +++ E F+ + E+ +ELD K N+L+S
Sbjct: 106 IKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLES 165
Query: 321 AEKLK 307
++LK
Sbjct: 166 VQRLK 170
>AK000108-1|BAA90949.1| 335|Homo sapiens protein ( Homo sapiens
cDNA FLJ20101 fis, clone COL04655. ).
Length = 335
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -2
Query: 489 LRDKIESVLKHVKKLNTNSEKF----MVTHETFKNDVGNRFEQFELRLNELDAKLNMLQS 322
++D+++ ++ +++ N + E+ +++ E F+ + E+ +ELD K N+L+S
Sbjct: 106 IKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLES 165
Query: 321 AEKLK 307
++LK
Sbjct: 166 VQRLK 170
>X67482-1|CAA47824.1| 427|Homo sapiens HL-60 1,25-dihydroxyvitamin
D-3 receptor protein.
Length = 427
Score = 29.9 bits (64), Expect = 8.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -2
Query: 309 KTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFE-DDM 133
+ A+ T NG +D +H +D + F+L E RKR+M + +
Sbjct: 54 RKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEE 113
Query: 132 EVLYDGVHPNPLLAIQCINEKLYDKHYK 49
E L D + P Q I L D H+K
Sbjct: 114 EALKDSLRPKLSEEQQRIIAILLDAHHK 141
>J03258-1|AAA61273.1| 427|Homo sapiens VDR protein.
Length = 427
Score = 29.9 bits (64), Expect = 8.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -2
Query: 309 KTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFE-DDM 133
+ A+ T NG +D +H +D + F+L E RKR+M + +
Sbjct: 54 RKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEE 113
Query: 132 EVLYDGVHPNPLLAIQCINEKLYDKHYK 49
E L D + P Q I L D H+K
Sbjct: 114 EALKDSLRPKLSEEQQRIIAILLDAHHK 141
>BC060832-1|AAH60832.1| 427|Homo sapiens VDR protein protein.
Length = 427
Score = 29.9 bits (64), Expect = 8.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -2
Query: 309 KTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFE-DDM 133
+ A+ T NG +D +H +D + F+L E RKR+M + +
Sbjct: 54 RKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEE 113
Query: 132 EVLYDGVHPNPLLAIQCINEKLYDKHYK 49
E L D + P Q I L D H+K
Sbjct: 114 EALKDSLRPKLSEEQQRIIAILLDAHHK 141
>AY342401-1|AAP88938.1| 424|Homo sapiens vitamin D
(1,25-dihydroxyvitamin D3) receptor protein.
Length = 424
Score = 29.9 bits (64), Expect = 8.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -2
Query: 309 KTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFE-DDM 133
+ A+ T NG +D +H +D + F+L E RKR+M + +
Sbjct: 51 RKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEE 110
Query: 132 EVLYDGVHPNPLLAIQCINEKLYDKHYK 49
E L D + P Q I L D H+K
Sbjct: 111 EALKDSLRPKLSEEQQRIIAILLDAHHK 138
>AF026260-1|AAB95155.1| 427|Homo sapiens vitamin D receptor
protein.
Length = 427
Score = 29.9 bits (64), Expect = 8.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -2
Query: 309 KTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFE-DDM 133
+ A+ T NG +D +H +D + F+L E RKR+M + +
Sbjct: 54 RKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEE 113
Query: 132 EVLYDGVHPNPLLAIQCINEKLYDKHYK 49
E L D + P Q I L D H+K
Sbjct: 114 EALKDSLRPKLSEEQQRIIAILLDAHHK 141
>AB002168-1|BAA83389.1| 427|Homo sapiens vitamin D receptor
protein.
Length = 427
Score = 29.9 bits (64), Expect = 8.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -2
Query: 309 KTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFE-DDM 133
+ A+ T NG +D +H +D + F+L E RKR+M + +
Sbjct: 54 RKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEE 113
Query: 132 EVLYDGVHPNPLLAIQCINEKLYDKHYK 49
E L D + P Q I L D H+K
Sbjct: 114 EALKDSLRPKLSEEQQRIIAILLDAHHK 141
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,999,907
Number of Sequences: 237096
Number of extensions: 1774490
Number of successful extensions: 4938
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 4726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4935
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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