Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k11
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0314 - 14238620-14240128                                         29   3.0  
02_05_0018 - 25011623-25013764                                         29   3.0  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           28   5.3  
06_03_0909 - 25870852-25870933,25871175-25871336,25871437-258715...    28   5.3  
06_02_0164 + 12498614-12498699,12498806-12498842,12499388-124995...    28   7.0  
12_02_0310 - 17358220-17358834                                         27   9.3  
12_01_0776 + 7076218-7076832                                           27   9.3  
07_03_0782 - 21497949-21498563                                         27   9.3  
04_01_0583 + 7563290-7563904                                           27   9.3  
02_05_0016 - 25004075-25005821,25006394-25006527                       27   9.3  
01_01_0036 + 278982-279494                                             27   9.3  

>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 524 STAAPTSPCIADCTPTPYFSRSTVASTQTHSL 429
           STAAP +P    CTP P  + S  ++    S+
Sbjct: 32  STAAPPTPTAVRCTPAPAAAPSAASAASARSI 63


>02_05_0018 - 25011623-25013764
          Length = 713

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 240 TPNDVTFNEYRSIAFYSFVIKKMGTSRLTHDK 335
           TPN +T  E RS   Y FV +++GT+ LT +K
Sbjct: 645 TPNRIT--ECRSYPLYRFVREELGTAYLTGEK 674


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 545 SPMPTCVSTAAPTSPCIADCTPTP 474
           +PMP+ ++T  PT P  A   PTP
Sbjct: 285 APMPSALATHVPTPPAPAPPVPTP 308


>06_03_0909 -
           25870852-25870933,25871175-25871336,25871437-25871558,
           25871762-25871982,25872537-25872675,25873290-25873513,
           25873830-25873941,25874411-25874611,25874686-25874853
          Length = 476

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 426 WTWLKYEMKKTD 391
           WTWLKYE+K  D
Sbjct: 288 WTWLKYELKHVD 299


>06_02_0164 +
           12498614-12498699,12498806-12498842,12499388-12499544,
           12499964-12500181,12500965-12501891
          Length = 474

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 388 TIRFLHFIFQPRPNRLWVWVEATVEREKYGVGVQSAIHGDVGAA-VETH 531
           T+ F H++  P   RL        E ++ G G+  A+ G V AA VE H
Sbjct: 280 TLAFSHYVLVPAAARLTKNPRGVGELKRMGAGLVIALLGMVAAAVVEVH 328


>12_02_0310 - 17358220-17358834
          Length = 204

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 436 WVWVEATVEREKYGVGVQSAIHGDVGAAVE 525
           W W+ A VER      VQ+ + G+V AAVE
Sbjct: 173 WRWM-AAVERVSAAAVVQAGVGGEVEAAVE 201


>12_01_0776 + 7076218-7076832
          Length = 204

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 436 WVWVEATVEREKYGVGVQSAIHGDVGAAVE 525
           W W+ A VER      VQ+ + G+V AAVE
Sbjct: 173 WRWM-AAVERVSAAAVVQAGVGGEVEAAVE 201


>07_03_0782 - 21497949-21498563
          Length = 204

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 436 WVWVEATVEREKYGVGVQSAIHGDVGAAVE 525
           W W+ A VER      VQ+ + G+V AAVE
Sbjct: 173 WRWM-AAVERVSAAAVVQAGVGGEVEAAVE 201


>04_01_0583 + 7563290-7563904
          Length = 204

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 436 WVWVEATVEREKYGVGVQSAIHGDVGAAVE 525
           W W+ A VER      VQ+ + G+V AAVE
Sbjct: 173 WRWM-AAVERVSAAAVVQAGVGGEVEAAVE 201


>02_05_0016 - 25004075-25005821,25006394-25006527
          Length = 626

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 237 LTPNDVTFNEYRSIAFYSFVIKKMGTSRLTHDK-RIRCADLT*CRIRIGRRNH 392
           L PN +   E RS   Y FV +++GT  LT +K R    +L    + I  R H
Sbjct: 557 LVPNRI--KECRSYPLYRFVREEVGTEYLTGEKTRSPGEELNKVLVAINERKH 607


>01_01_0036 + 278982-279494
          Length = 170

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 436 WVWVEATVEREKYGVGVQSAIHGDVGAAVE 525
           W W+ A VER      VQ+ + G+V AAVE
Sbjct: 139 WRWM-AAVERVSAAAVVQAGVGGEVEAAVE 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,623,624
Number of Sequences: 37544
Number of extensions: 311271
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)