Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k11
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006625-10|AAK68271.1|  325|Caenorhabditis elegans Hypothetical...    30   1.2  
U40028-7|AAA81118.1|  155|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   8.4  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AC006625-10|AAK68271.1|  325|Caenorhabditis elegans Hypothetical
           protein C55B7.11 protein.
          Length = 325

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 114 NYHFIHVHQVARAAFSYFNFKSLHKNTSITAHEVIPLK*FILTPNDVTFNEYRSIAFYSF 293
           N HF  V+ +  A F+Y     L+  T I   E++P    IL P D +    +    + F
Sbjct: 118 NVHFNEVYAIRTAIFNYVTQPELNTETLI---EILPDGKLILNPRDASKYAEKPCDEHIF 174

Query: 294 VIKKM 308
           ++K++
Sbjct: 175 ILKQL 179


>U40028-7|AAA81118.1|  155|Caenorhabditis elegans Hypothetical
           protein T05A7.3 protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 545 SPMPTCVSTAAPTSPCIADCTPTPYFSRSTVASTQTHSLF 426
           +P P  + T APT+P  + C  T  F   T+ S    S F
Sbjct: 34  TPAPPVIITPAPTNP--SGCNSTALFDAGTITSPNYPSTF 71


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 545  SPMPTCVSTAAPTSPCIADCTPTPYFSRSTVASTQT 438
            SP PT  ST+ P+S        +     STV +TQT
Sbjct: 1507 SPQPTVSSTSVPSSTGATSSGSSTTVGSSTVGATQT 1542


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 548 CSPMPTCVSTAAPTSPCIADCT 483
           C P+PTC +  A +  C   CT
Sbjct: 538 CCPLPTCPNNIASSQRCSGGCT 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,932,133
Number of Sequences: 27780
Number of extensions: 293640
Number of successful extensions: 751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)