Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k08
(751 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein. 31 5.8
BC073962-1|AAH73962.1| 289|Homo sapiens Unknown (protein for IM... 31 5.8
BC031573-1|AAH31573.1| 710|Homo sapiens neuronal guanine nucleo... 31 5.8
BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-co... 31 5.8
AJ238899-1|CAC00686.1| 425|Homo sapiens guanine nucleotide exch... 31 5.8
AC016692-1|AAX93288.1| 582|Homo sapiens unknown protein. 31 5.8
AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled co... 31 5.8
>D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein.
Length = 1593
Score = 30.7 bits (66), Expect = 5.8
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = -2
Query: 516 TLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN----V 349
TL K+ L N Y+ + EN K+KK G + +E+ L QN DN V
Sbjct: 860 TLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALV 918
Query: 348 KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHM 196
K V+ +NE+ + + + + EIK++ S+ I + K H+
Sbjct: 919 KHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHV 969
>BC073962-1|AAH73962.1| 289|Homo sapiens Unknown (protein for
IMAGE:6472601) protein.
Length = 289
Score = 30.7 bits (66), Expect = 5.8
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 2/166 (1%)
Frame = -2
Query: 735 GKLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNKY 556
G LY+ Y+DK+ I R++ EIE +N S + + E + P +PP +
Sbjct: 135 GLLYQEYRDKSTLQ-EIETRRQQDAEIEDNTNGSPASEDTPEEEEEEEEEEEPASPPERK 193
Query: 555 VVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENL--KKVKKEDGSMHIV 382
+ + L+ N S FN ++ I S+ E L +++K ++ +V
Sbjct: 194 TLPQICLLSNPHSR------------FNLWQDLPEIRSSGVLEILQPEEIKLQEAMFELV 241
Query: 381 EQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDV 244
T K N +V F ER+ E + + + DV
Sbjct: 242 ----TSEASYYKSLNLLVSHFMENERIRKILHPSEAHILFSNVLDV 283
>BC031573-1|AAH31573.1| 710|Homo sapiens neuronal guanine
nucleotide exchange factor protein.
Length = 710
Score = 30.7 bits (66), Expect = 5.8
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 2/166 (1%)
Frame = -2
Query: 735 GKLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNKY 556
G LY+ Y+DK+ I R++ EIE +N S + + E + P +PP +
Sbjct: 176 GLLYQEYRDKSTLQ-EIETRRQQDAEIEDNTNGSPASEDTPEEEEEEEEEEEPASPPERK 234
Query: 555 VVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENL--KKVKKEDGSMHIV 382
+ + L+ N S FN ++ I S+ E L +++K ++ +V
Sbjct: 235 TLPQICLLSNPHSR------------FNLWQDLPEIRSSGVLEILQPEEIKLQEAMFELV 282
Query: 381 EQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDV 244
T K N +V F ER+ E + + + DV
Sbjct: 283 ----TSEASYYKSLNLLVSHFMENERIRKILHPSEAHILFSNVLDV 324
>BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-coil 1
protein.
Length = 1594
Score = 30.7 bits (66), Expect = 5.8
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = -2
Query: 516 TLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN----V 349
TL K+ L N Y+ + EN K+KK G + +E+ L QN DN V
Sbjct: 858 TLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALV 916
Query: 348 KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHM 196
K V+ +NE+ + + + + EIK++ S+ I + K H+
Sbjct: 917 KHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHV 967
>AJ238899-1|CAC00686.1| 425|Homo sapiens guanine nucleotide
exchange factor protein.
Length = 425
Score = 30.7 bits (66), Expect = 5.8
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 2/166 (1%)
Frame = -2
Query: 735 GKLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNKY 556
G LY+ Y+DK+ I R++ EIE +N S + + E + P +PP +
Sbjct: 18 GLLYQEYRDKSTLQ-EIETRRQQDAEIEDNTNGSPASEDTPEEEEEEEEEEEPASPPERK 76
Query: 555 VVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENL--KKVKKEDGSMHIV 382
+ + L+ N S FN ++ I S+ E L +++K ++ +V
Sbjct: 77 TLPQICLLSNPHSR------------FNLWQDLPEIRSSGVLEILQPEEIKLQEAMFELV 124
Query: 381 EQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDV 244
T K N +V F ER+ E + + + DV
Sbjct: 125 ----TSEASYYKSLNLLVSHFMENERIRKILHPSEAHILFSNVLDV 166
>AC016692-1|AAX93288.1| 582|Homo sapiens unknown protein.
Length = 582
Score = 30.7 bits (66), Expect = 5.8
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 2/166 (1%)
Frame = -2
Query: 735 GKLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNKY 556
G LY+ Y+DK+ I R++ EIE +N S + + E + P +PP +
Sbjct: 48 GLLYQEYRDKSTLQ-EIETRRQQDAEIEDNTNGSPASEDTPEEEEEEEEEEEPASPPERK 106
Query: 555 VVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENL--KKVKKEDGSMHIV 382
+ + L+ N S FN ++ I S+ E L +++K ++ +V
Sbjct: 107 TLPQICLLSNPHSR------------FNLWQDLPEIRSSGVLEILQPEEIKLQEAMFELV 154
Query: 381 EQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDV 244
T K N +V F ER+ E + + + DV
Sbjct: 155 ----TSEASYYKSLNLLVSHFMENERIRKILHPSEAHILFSNVLDV 196
>AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled coil
protein protein.
Length = 1594
Score = 30.7 bits (66), Expect = 5.8
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = -2
Query: 516 TLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN----V 349
TL K+ L N Y+ + EN K+KK G + +E+ L QN DN V
Sbjct: 858 TLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALV 916
Query: 348 KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHM 196
K V+ +NE+ + + + + EIK++ S+ I + K H+
Sbjct: 917 KHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHV 967
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,797,475
Number of Sequences: 237096
Number of extensions: 1528334
Number of successful extensions: 6649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6649
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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