Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k08
         (751 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anem...    31   1.3  
AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-P...    31   1.3  
AY061429-1|AAL28977.1|  306|Drosophila melanogaster LD35950p pro...    30   3.9  
AE014297-4308|AAF56847.1|  306|Drosophila melanogaster CG11837-P...    30   3.9  
AJ009736-3|CAA08808.1|  510|Drosophila melanogaster envelope pro...    29   5.1  
AE014296-1378|AAF50482.1| 1417|Drosophila melanogaster CG7504-PA...    29   5.1  
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    29   6.8  

>AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anemia
           complementationgroup D2 protein protein.
          Length = 1478

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +1

Query: 160 SALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKL-FVFLSYSQPLFVFERQYYK 336
           +++ +  FT +  ++L  +I +N   S+YI N+ R  IKL  + +S  + +    RQ+Y+
Sbjct: 403 ASVPAAEFTSFDMILLLLLIHVNEDNSLYIENILRRRIKLEHITVSILEEI----RQHYR 458

Query: 337 IVTFYIIHILSQILFD 384
            +    I  L  IL D
Sbjct: 459 HILEQHITTLMNILHD 474


>AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-PA
           protein.
          Length = 1478

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +1

Query: 160 SALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKL-FVFLSYSQPLFVFERQYYK 336
           +++ +  FT +  ++L  +I +N   S+YI N+ R  IKL  + +S  + +    RQ+Y+
Sbjct: 403 ASVPAAEFTSFDMILLLLLIHVNEDNSLYIENILRRRIKLEHITVSILEEI----RQHYR 458

Query: 337 IVTFYIIHILSQILFD 384
            +    I  L  IL D
Sbjct: 459 HILEQHITTLMNILHD 474


>AY061429-1|AAL28977.1|  306|Drosophila melanogaster LD35950p
           protein.
          Length = 306

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = -2

Query: 657 IETASNNFFVSPYVSQILKYSESVKFPDNPPNKYVVDNLNLIV----NKKSTLTYKYSSV 490
           ++   NNF   P V   +   E  K P  P N    D L  I     NK    T+K +SV
Sbjct: 182 MKVGKNNFRPPPKVESSVVRLEP-KNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSV 240

Query: 489 ANLLFNNYKYHDNIASNNNAENLKKVKK 406
             +L  NYK + ++ +    ++ K   K
Sbjct: 241 LEMLEKNYKLYRSLRNEPIEDDFKMQDK 268


>AE014297-4308|AAF56847.1|  306|Drosophila melanogaster CG11837-PA
           protein.
          Length = 306

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = -2

Query: 657 IETASNNFFVSPYVSQILKYSESVKFPDNPPNKYVVDNLNLIV----NKKSTLTYKYSSV 490
           ++   NNF   P V   +   E  K P  P N    D L  I     NK    T+K +SV
Sbjct: 182 MKVGKNNFRPPPKVESSVVRLEP-KNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSV 240

Query: 489 ANLLFNNYKYHDNIASNNNAENLKKVKK 406
             +L  NYK + ++ +    ++ K   K
Sbjct: 241 LEMLEKNYKLYRSLRNEPIEDDFKMQDK 268


>AJ009736-3|CAA08808.1|  510|Drosophila melanogaster envelope
           protein protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = -2

Query: 597 SESVKFPDNPPNKYVVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENLK 418
           SE+  +P+ P  +Y+VD L   +N    ++     + N++   YKY       ++ E L+
Sbjct: 112 SEANNYPNVPQIQYLVDKLKREINGLRIISRSKRGLLNVVGKAYKYLFGTLDEDDREELE 171

Query: 417 K 415
           +
Sbjct: 172 E 172


>AE014296-1378|AAF50482.1| 1417|Drosophila melanogaster CG7504-PA
           protein.
          Length = 1417

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -2

Query: 441 NNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWIS 262
           +  AE+ KK++K+   +H  +      ++ VKG +  V   K   +L ++   E   WI 
Sbjct: 640 HQKAEDSKKLQKKLRKVHFNDDVKVHCIERVKGASSKVQGRKECIKLRLSSYRERREWIR 699

Query: 261 GEIKDVD 241
            E K V+
Sbjct: 700 RENKPVN 706


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
 Frame = -2

Query: 612  QILKYSESVKFPDNPPNKYVVDNLNLIVNKKSTL--TYKYSSVANLLFNNYKYHDN---- 451
            QI K S+++    N P    +        K ST+  T K S   NL +   K H N    
Sbjct: 852  QIAKLSQNLILSKNTPIHKFLKPKKANKKKTSTIDRTIKLSLELNLPYKPIKLHKNKPPW 911

Query: 450  IASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFI 331
               N    +L+  KKE  S     +      +N+K HNFI
Sbjct: 912  TLPNLIDTSLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFI 951


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,769,879
Number of Sequences: 53049
Number of extensions: 505448
Number of successful extensions: 1475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)