Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k07
(285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 75 2e-15
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 75 2e-15
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 0.40
SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces... 27 0.52
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 26 1.2
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 1.2
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 1.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 1.2
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 2.8
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 2.8
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 3.7
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 24 4.9
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 23 6.5
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 23 6.5
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 23 6.5
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 23 8.5
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 23 8.5
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 23 8.5
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 23 8.5
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 23 8.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 23 8.5
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 75.4 bits (177), Expect = 2e-15
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCG 43
Score = 50.4 bits (115), Expect = 5e-08
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Frame = -2
Query: 122 DAMKRSCVGIWSC--KRCKRTVAGGAWVFSTTAASSCRSAVR 3
+ +KR+ GIW C K CK+ +AGGAW +T AA+S RS +R
Sbjct: 45 NTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIR 86
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 75.4 bits (177), Expect = 2e-15
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCG 43
Score = 50.4 bits (115), Expect = 5e-08
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = -2
Query: 116 MKRSCVGIWSC--KRCKRTVAGGAWVFSTTAASSCRSAVR 3
+KR+ GIW C K C +T+AGGAW +T AA+S RS +R
Sbjct: 47 VKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIR 86
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 0.40
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = -2
Query: 269 YRRGLPKWPNVPKRLELL----ANMAHVTV--PLYVKWSKRW-K*PNTQSILAHFVDAMK 111
YR+ LP P++P R+E L ++ H T+ L ++ S + NTQ AH + +M+
Sbjct: 427 YRKRLPHSPSMPSRVEFLPALESSQFHETLNSELSLQLSDDFVLYKNTQEENAHLMLSME 486
Query: 110 RSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAV 6
+ C + + G FS+ + + V
Sbjct: 487 KECANFYEYAKTAIYENNGRITFSSLLPNDLKRPV 521
>SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 155
Score = 27.1 bits (57), Expect = 0.52
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 149 TQSILAHFVDAMKRSCVGIWSCKRCKRTVA-GGAWVFS 39
T++ + ++D K S ++ CK+C + V AWV S
Sbjct: 4 TETSHSGYIDFKKESQPSVFQCKKCFQIVGDSNAWVIS 41
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 1.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 177 MVKKMEVTQHAKYTCSFCGCYETFLCRHLVL*AMQEDCSRRSLGILH 37
+V K E+++ T G + +LC+ L + E C S+G+LH
Sbjct: 219 LVAKRELSRRQNRTD---GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 1.2
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -2
Query: 140 ILAHFVDAMKRSCVGIWSC 84
+++H VD + ++C IW C
Sbjct: 688 LVSHDVDFLDKTCTSIWQC 706
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 1.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 166 LFDHFT*RGTVTCAIFASNSNLFGT 240
+FD FT +T I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 1.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 201 VCHICQ*FQPFWYVWPF 251
+ ++ Q FQ WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 2.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 164 IFLTILRREAP*RVPYLPVIPTFLVRLAILVNL 262
I L I + P Y+P++P L RL L N+
Sbjct: 253 IMLEICSSQLPFVEQYMPILPLLLERLKSLQNM 285
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 24.6 bits (51), Expect = 2.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 131 HFVDAMKRSCVGIWSCKRCKRT 66
H + K IW+CK C++T
Sbjct: 53 HSIPGSKGEANLIWTCKNCRKT 74
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.2 bits (50), Expect = 3.7
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 67 VLLHRLQDQMPTQERFIASTK*ASILCVLGYFHLFDHFT*RGTVTCAIFASNS 225
VLL L D + E K ILC+ Y LF R ++ A +NS
Sbjct: 609 VLLTTLMDNVSISEEVSEHIKDVQILCLQVYPRLFSLGHDRDSIVIATNTTNS 661
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 4.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 262 EVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLL 131
EV ++GQ Y + W + T ++T + +P R VYL+
Sbjct: 178 EVIRDGQEYNVMADIWSLGITAYEIATGSPPHAKEDPFRAVYLI 221
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 23.4 bits (48), Expect = 6.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKR 69
+K C +W C+ CK+
Sbjct: 28 LKLKCDRVWPCENCKK 43
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 23.4 bits (48), Expect = 6.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -1
Query: 168 KMEVTQHAKYTCSFCGCYETF 106
K E Y C+F GC + F
Sbjct: 561 KSESKSQGNYVCTFAGCNKRF 581
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 23.4 bits (48), Expect = 6.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 283 FVNFCIGEVYQNGQTYQ 233
FVN CI +Y+NG + +
Sbjct: 537 FVNTCINVLYKNGDSLE 553
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 23.0 bits (47), Expect = 8.5
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -3
Query: 256 YQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILWML*NVLVSASGLVSD 77
Y+N N+W C S+ + D N K Y+ +L M+ +L + SG ++
Sbjct: 627 YENAMLRNLEDNHWDEEVQAYCDSSVDEYDDPINVCHKGYVTLLPMMLGLLPADSGRLTS 686
Query: 76 ARGL*QEE 53
L ++E
Sbjct: 687 LLKLIRDE 694
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 250 NGQTYQKGWNYWQIW 206
NG T Q G+ WQ W
Sbjct: 656 NGNTSQSGFMAWQRW 670
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 23.0 bits (47), Expect = 8.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 140 YFACWVTSIFLTILRREAP*RVPYLPVIPTFLVRLAILVNL 262
YF WV S ++R E R + I T++ A+L+ L
Sbjct: 202 YFVYWVISFPFHLIRPEYLQRFFLIKSISTYIACFAMLIFL 242
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 137 LAHFVDAMKRSCVGIWSCKRCKRTV 63
L HFV A K + + C+ CK+ V
Sbjct: 290 LKHFVHAEKLTKQNKYRCENCKQLV 314
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.0 bits (47), Expect = 8.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 141 YTCSFCGCY 115
Y CSFC CY
Sbjct: 213 YICSFCFCY 221
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 211 FASNSNLFGTFGHFGKPL 264
FA+N LFG HF + L
Sbjct: 149 FATNEKLFGVKSHFDEDL 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,672
Number of Sequences: 5004
Number of extensions: 26139
Number of successful extensions: 83
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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