Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k07
(285 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 80 2e-16
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 79 5e-16
07_01_0119 - 908600-909592,909685-909885 28 1.0
12_01_0154 + 1179461-1179774,1180154-1180199 27 2.3
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313 27 2.3
07_03_1237 + 25073010-25073513 27 3.1
03_05_0821 - 27960414-27961253 27 3.1
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 4.1
11_01_0157 + 1299635-1299952 26 4.1
02_01_0679 - 5048653-5051394 26 4.1
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 25 7.1
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776 25 7.1
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 25 9.4
03_05_0669 + 26589867-26589927,26590674-26590858,26590950-265910... 25 9.4
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 25 9.4
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225... 25 9.4
01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323 25 9.4
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 80.2 bits (189), Expect = 2e-16
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = -1
Query: 252 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCG
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 68
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -2
Query: 119 AMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
A+KR VGIW CK C + AGGA+ +T +A + RS +R
Sbjct: 71 AVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIR 109
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 79.0 bits (186), Expect = 5e-16
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = -1
Query: 243 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCG
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 73
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -2
Query: 119 AMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
A+KR VGIW CK C + AGGA+ +T +A + RS +R
Sbjct: 76 AVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIR 114
>07_01_0119 - 908600-909592,909685-909885
Length = 397
Score = 28.3 bits (60), Expect = 1.0
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = -2
Query: 278 QLLYRRGLPKWPNVPKRLE-LLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVDAMKRSC 102
+LLYRR L P+ ++ +L+N + L V RW+ + LA +
Sbjct: 195 ELLYRRRLGSVEFFPRDIDAVLSNALSLGTFLAVPRGTRWR--GVEGFLAS--PPASWAV 250
Query: 101 VGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
+W+CK R GA AA + R+A R
Sbjct: 251 ASLWNCKDAFRLEVRGAPRLWRAAARATRAADR 283
>12_01_0154 + 1179461-1179774,1180154-1180199
Length = 119
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 147 AKYTCSFCGCYETFLCRHLVL*AMQEDCS 61
A C+ CGC+++F R + A + DCS
Sbjct: 67 AALLCAACGCHQSFHRREVEAAAAECDCS 95
>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
Length = 739
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 267 SERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGCYETFLCRHL- 91
S +FT + RT+ Y +Y + + ++ +V + TCS GC +T + + L
Sbjct: 125 SNKFTVVGCRTQAYIADQDYVGKYMSGCVSVCRRGDVWKATNGTCSGIGCCQTAIPKGLD 184
Query: 90 VL*AMQEDCSRRSLGI 43
A +D S + GI
Sbjct: 185 YYQAFFDDSSMNTSGI 200
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 113 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 18
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>03_05_0821 - 27960414-27961253
Length = 279
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = -2
Query: 188 LYVKWSKRWK*PNTQSILAHFVDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASS 21
L ++W RWK T+ +A F+ + S V +W W F+ +S
Sbjct: 195 LGLRWPPRWKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEGMAGWAFNAVFNAS 250
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 284 LCQLLYRRGLPKWP 243
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>11_01_0157 + 1299635-1299952
Length = 105
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 147 AKYTCSFCGCYETFLCRHLVL*AMQEDCS 61
A C+ CGC+ +F R + A + DCS
Sbjct: 67 AALLCAACGCHRSFHRREVEAAAAECDCS 95
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 278 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 159
++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 119 HPQNEQVYFACWVTSIFLTI 178
HP +FA W+ +FLTI
Sbjct: 331 HPIRVNFFFAPWIACLFLTI 350
>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
Length = 80
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -1
Query: 282 LSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 142
L ++ + + K + G+T + +RY LR+ ++K+EV K
Sbjct: 13 LEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 198 YGASLRK--MVKKMEVTQHAKYTCSFCGCYETFLCRHLVL*AMQEDCSR 58
+ A LRK + K +++ AKYT F G T +C+ A++E+ +
Sbjct: 672 FKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEK 720
>03_05_0669 +
26589867-26589927,26590674-26590858,26590950-26591045,
26591128-26591223
Length = 145
Score = 25.0 bits (52), Expect = 9.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -2
Query: 239 VPKRLELLANMAHVTVPLYVKW 174
+P EL+ +++ +P+YV W
Sbjct: 84 LPDASELIVGSSYICIPVYVSW 105
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 198 YGASLRK--MVKKMEVTQHAKYTCSFCGCYETFLCRHLVL*AMQEDCSR 58
+ A LRK + K +++ AKYT F G T +C+ A++E+ +
Sbjct: 663 FKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEK 711
>01_02_0071 +
10822008-10822011,10822219-10822364,10822452-10822544,
10822722-10822781,10822855-10823127,10823229-10823303,
10823419-10823475,10823593-10823733,10823813-10823863,
10823905-10823955,10823956-10824051,10824159-10824242,
10824330-10824432,10824518-10824600
Length = 438
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 195 GASLRKMVKKMEVTQHAKYTCSFCG 121
GAS+ +VK V QHAK C+F G
Sbjct: 415 GASMEFLVKL--VPQHAKKQCAFLG 437
>01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323
Length = 217
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 52 LGYSPLLLPHH 20
LGYSPL+L HH
Sbjct: 44 LGYSPLVLDHH 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,691,673
Number of Sequences: 37544
Number of extensions: 170152
Number of successful extensions: 420
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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