Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k07
(285 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X66699-1|CAA47244.1| 92|Homo sapiens ribosomal protein L37a pr... 90 1e-18
L06499-1|AAA60280.1| 92|Homo sapiens ribosomal protein L37a pr... 90 1e-18
CR542152-1|CAG46949.1| 92|Homo sapiens RPL37A protein. 90 1e-18
BC082239-1|AAH82239.1| 92|Homo sapiens ribosomal protein L37a ... 90 1e-18
BC067789-1|AAH67789.1| 92|Homo sapiens ribosomal protein L37a ... 90 1e-18
BC063476-1|AAH63476.1| 72|Homo sapiens RPL37A protein protein. 90 1e-18
BC016748-1|AAH16748.1| 92|Homo sapiens ribosomal protein L37a ... 90 1e-18
BC014262-1|AAH14262.1| 92|Homo sapiens ribosomal protein L37a ... 90 1e-18
AC073321-2|AAY15078.1| 92|Homo sapiens unknown protein. 90 1e-18
BC000555-1|AAH00555.2| 91|Homo sapiens RPL37A protein protein. 88 4e-18
AF174595-1|AAF04516.1| 173|Homo sapiens F-box protein Fbx3 prot... 29 2.1
U14134-1|AAA21873.1| 338|Homo sapiens transcription factor IIIA... 29 2.7
AY577304-1|AAT84393.1| 128|Homo sapiens immunoglobulin heavy ch... 28 4.8
U20272-1|AAA75623.1| 363|Homo sapiens DNA/RNA-binding protein p... 27 8.3
D32257-1|BAA06988.1| 423|Homo sapiens Xenopus transcription fac... 27 8.3
D29990-1|BAA06271.1| 658|Homo sapiens cationic amino acid trans... 27 8.3
>X66699-1|CAA47244.1| 92|Homo sapiens ribosomal protein L37a
protein.
Length = 92
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 43
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
MKR VGIW C C +TVAGGAW ++TT+A + +SA+R
Sbjct: 47 MKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR 84
>L06499-1|AAA60280.1| 92|Homo sapiens ribosomal protein L37a
protein.
Length = 92
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 43
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
MKR VGIW C C +TVAGGAW ++TT+A + +SA+R
Sbjct: 47 MKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR 84
>CR542152-1|CAG46949.1| 92|Homo sapiens RPL37A protein.
Length = 92
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 43
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
MKR VGIW C C +TVAGGAW ++TT+A + +SA+R
Sbjct: 47 MKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR 84
>BC082239-1|AAH82239.1| 92|Homo sapiens ribosomal protein L37a
protein.
Length = 92
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 43
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
MKR VGIW C C +TVAGGAW ++TT+A + +SA+R
Sbjct: 47 MKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR 84
>BC067789-1|AAH67789.1| 92|Homo sapiens ribosomal protein L37a
protein.
Length = 92
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 43
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
MKR VGIW C C +TVAGGAW ++TT+A + +SA+R
Sbjct: 47 MKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR 84
>BC063476-1|AAH63476.1| 72|Homo sapiens RPL37A protein protein.
Length = 72
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 43
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVF 42
MKR VGIW C C +TVAGGAW +
Sbjct: 47 MKRRAVGIWHCGSCMKTVAGGAWTY 71
>BC016748-1|AAH16748.1| 92|Homo sapiens ribosomal protein L37a
protein.
Length = 92
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 43
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
MKR VGIW C C +TVAGGAW ++TT+A + +SA+R
Sbjct: 47 MKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR 84
>BC014262-1|AAH14262.1| 92|Homo sapiens ribosomal protein L37a
protein.
Length = 92
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 43
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
MKR VGIW C C +TVAGGAW ++TT+A + +SA+R
Sbjct: 47 MKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR 84
>AC073321-2|AAY15078.1| 92|Homo sapiens unknown protein.
Length = 92
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 43
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
MKR VGIW C C +TVAGGAW ++TT+A + +SA+R
Sbjct: 47 MKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR 84
>BC000555-1|AAH00555.2| 91|Homo sapiens RPL37A protein protein.
Length = 91
Score = 88.2 bits (209), Expect = 4e-18
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = -1
Query: 246 AKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
AKRTKKVGI GKYGTRYGASLRKMVKK+E++QHAKYTCSFCG
Sbjct: 1 AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCG 42
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -2
Query: 116 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
MKR VGIW C C +TVAGGAW ++TT+A + +SA+R
Sbjct: 46 MKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR 83
>AF174595-1|AAF04516.1| 173|Homo sapiens F-box protein Fbx3
protein.
Length = 173
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 250 NGQTYQKGWNYWQIWHTL 197
NGQ W YW+ WH L
Sbjct: 148 NGQKLVGSWGYWEAWHCL 165
>U14134-1|AAA21873.1| 338|Homo sapiens transcription factor IIIA
protein.
Length = 338
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -1
Query: 225 GITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGCYETFLCRHLVL*AMQEDCSRRSLG 46
G K+ T+ ++L+K ++ Q +Y CSF C +TF +H L Q C +
Sbjct: 104 GCDQKFNTK--SNLKKHFERKHENQQKQYICSFEDCKKTFK-KHQQLKIHQ--CQHTNEP 158
Query: 45 ILHYCC 28
+ CC
Sbjct: 159 LFKLCC 164
>AY577304-1|AAT84393.1| 128|Homo sapiens immunoglobulin heavy chain
variable region protein protein.
Length = 128
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -3
Query: 259 VYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNP 152
+Y ++Y GWNY+ W ++ +G NP
Sbjct: 93 MYYCARSYSTGWNYFDYWGQGTLVTVSSGSASAPNP 128
>U20272-1|AAA75623.1| 363|Homo sapiens DNA/RNA-binding protein
protein.
Length = 363
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 225 GITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGCYETF 106
G K+ T+ ++L+K ++ Q +Y CSF C +TF
Sbjct: 104 GCDQKFNTK--SNLKKHFERKHENQQKQYICSFEDCKKTF 141
>D32257-1|BAA06988.1| 423|Homo sapiens Xenopus transcription factor
IIIA homologue protein.
Length = 423
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 225 GITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGCYETF 106
G K+ T+ ++L+K ++ Q +Y CSF C +TF
Sbjct: 164 GCDQKFNTK--SNLKKHFERKHENQQKQYICSFEDCKKTF 201
>D29990-1|BAA06271.1| 658|Homo sapiens cationic amino acid
transporter 2 protein.
Length = 658
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Frame = +2
Query: 143 FACWVTSIFLTILR-----REAP*RVPYLPVIPTF--LVRLAILVNLS-DTKV 277
F +I LTI R R+ VP+LP +PTF LV + ++V LS DT V
Sbjct: 533 FLVLFVAIVLTIWRQPQNQRKVAFMVPFLPFLPTFTILVNIYLMVQLSADTWV 585
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,645,047
Number of Sequences: 237096
Number of extensions: 1001516
Number of successful extensions: 2201
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2201
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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