Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k07
(285 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical ... 87 3e-18
Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical pr... 30 0.23
Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical pr... 29 0.71
AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical ... 27 2.9
AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical ... 27 2.9
Z81494-11|CAN99681.1| 455|Caenorhabditis elegans Hypothetical p... 26 5.0
Z81494-7|CAI79161.1| 387|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z81494-6|CAC42275.1| 451|Caenorhabditis elegans Hypothetical pr... 26 5.0
AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical... 26 5.0
Z92835-6|CAB07399.1| 496|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z75526-8|CAA99773.1| 496|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical pr... 25 6.6
AF221132-1|AAF82410.1| 498|Caenorhabditis elegans diacylglycero... 25 6.6
AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1 ... 25 6.6
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z50027-7|CAA90332.3| 460|Caenorhabditis elegans Hypothetical pr... 25 8.7
>AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical
protein Y48B6A.2 protein.
Length = 91
Score = 86.6 bits (205), Expect = 3e-18
Identities = 37/43 (86%), Positives = 40/43 (93%)
Frame = -1
Query: 249 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 121
MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCG
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCG 43
Score = 53.6 bits (123), Expect = 2e-08
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = -2
Query: 122 DAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 3
+AMKR GIW+C +C + VAGGA+V+ T A++ RS +R
Sbjct: 45 EAMKRKATGIWNCAKCHKVVAGGAYVYGTVTAATVRSTIR 84
>Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical
protein T13H5.4 protein.
Length = 500
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 271 CIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 122
C + Y+ + +QK +N W+ H +RCL N +N T+ L LW
Sbjct: 410 CGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458
>Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical
protein F58E10.5 protein.
Length = 242
Score = 28.7 bits (61), Expect = 0.71
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 183 RKMVKKMEVTQHAKYTCSFCGCYETFLCR 97
+ +KK+ T H +CS CGC ET L R
Sbjct: 164 KNKIKKIS-TMHINSSCSNCGCRETKLWR 191
>AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical
protein F16B4.2a protein.
Length = 362
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 113 KRSCVGIWSCKRCKRTVAGGAWVFSTT 33
K C+ W+C C +T+ +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357
>AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical
protein F16B4.2b protein.
Length = 367
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 113 KRSCVGIWSCKRCKRTVAGGAWVFSTT 33
K C+ W+C C +T+ +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362
>Z81494-11|CAN99681.1| 455|Caenorhabditis elegans Hypothetical
protein F02E9.10c protein.
Length = 455
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 143 SILAHFVDAMKRSCVGIWSCKRC 75
+I+A + A RS VGIWS + C
Sbjct: 14 TIVAKYEKAHNRSVVGIWSFRFC 36
>Z81494-7|CAI79161.1| 387|Caenorhabditis elegans Hypothetical
protein F02E9.10b protein.
Length = 387
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 143 SILAHFVDAMKRSCVGIWSCKRC 75
+I+A + A RS VGIWS + C
Sbjct: 14 TIVAKYEKAHNRSVVGIWSFRFC 36
>Z81494-6|CAC42275.1| 451|Caenorhabditis elegans Hypothetical
protein F02E9.10a protein.
Length = 451
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 143 SILAHFVDAMKRSCVGIWSCKRC 75
+I+A + A RS VGIWS + C
Sbjct: 14 TIVAKYEKAHNRSVVGIWSFRFC 36
>AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical
protein Y38F1A.9 protein.
Length = 108
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 207 GTRYGASLRKMVKKMEVTQHAK 142
G RY + ++KMV K VT H K
Sbjct: 46 GDRYVSKIKKMVGKFTVTLHIK 67
>Z92835-6|CAB07399.1| 496|Caenorhabditis elegans Hypothetical
protein H19N07.4 protein.
Length = 496
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 209 MAHVTVPLYVKWSKRWK*PNTQSIL--AHFVDAMK 111
+AH+T+P+ V + +WK P ++ + ++A+K
Sbjct: 157 IAHLTIPVVVTLTHKWKNPLWSVVMMGVYVIEALK 191
>Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical
protein T05D4.4 protein.
Length = 651
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 59 LLQSSCIAYKTRCRHKNVS*HPQNEQVYFACWVTSIF---LTILRREAP 196
+++ C +YKT C+HK V+ V W T F +T+ R P
Sbjct: 125 VIKKFCPSYKTACKHKAVT-----TSVSLTSWPTDPFAKEITVASRPLP 168
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 128 FVDAMKRSCVGIWSCKRCKR 69
+VD +CVGIW +R KR
Sbjct: 2350 WVDIPAETCVGIWPVERKKR 2369
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 128 FVDAMKRSCVGIWSCKRCKR 69
+VD +CVGIW +R KR
Sbjct: 2377 WVDIPAETCVGIWPVERKKR 2396
>Z75526-8|CAA99773.1| 496|Caenorhabditis elegans Hypothetical
protein H19N07.4 protein.
Length = 496
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 209 MAHVTVPLYVKWSKRWK*PNTQSIL--AHFVDAMK 111
+AH+T+P+ V + +WK P ++ + ++A+K
Sbjct: 157 IAHLTIPVVVTLTHKWKNPLWSVVMMGVYVIEALK 191
>Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical
protein R06C7.3 protein.
Length = 489
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 280 VNFCIGEVYQNGQTYQKGWNYWQIW 206
++FC + ++NG++ G+N W+ W
Sbjct: 93 IDFCCPD-HRNGESLIAGYNRWRSW 116
>AF221132-1|AAF82410.1| 498|Caenorhabditis elegans diacylglycerol
acyltransferase protein.
Length = 498
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 209 MAHVTVPLYVKWSKRWK*PNTQSIL--AHFVDAMK 111
+AH+T+P+ V + +WK P ++ + ++A+K
Sbjct: 159 IAHLTIPVVVTLTHKWKNPLWSVVMMGVYVIEALK 193
>AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1
protein.
Length = 489
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 280 VNFCIGEVYQNGQTYQKGWNYWQIW 206
++FC + ++NG++ G+N W+ W
Sbjct: 93 IDFCCPD-HRNGESLIAGYNRWRSW 116
>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
protein W09G3.6 protein.
Length = 1125
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 134 AHFVDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASS 21
A+ +K +CV S C T G ++FS AA S
Sbjct: 40 ANSTKRVKYTCVASTSKSLCLGTSTGSVYIFSRYAAKS 77
>Z50027-7|CAA90332.3| 460|Caenorhabditis elegans Hypothetical
protein C39B10.2a protein.
Length = 460
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 267 SERFTKMAKRTKKVGITGKYG 205
SE+F MAK+ + V +TG+ G
Sbjct: 332 SEKFDSMAKKMQSVVLTGRRG 352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,389,327
Number of Sequences: 27780
Number of extensions: 151252
Number of successful extensions: 413
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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