Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k05
         (530 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025200-1|ABF17891.1|  522|Drosophila melanogaster FI01120p pro...    29   3.0  
AY069782-1|AAL39927.1|  522|Drosophila melanogaster SD02478p pro...    29   3.0  
AE014296-3606|AAF51768.1|  522|Drosophila melanogaster CG11247-P...    29   3.0  
AE014296-3605|AAF51769.1|  522|Drosophila melanogaster CG11247-P...    29   3.0  

>BT025200-1|ABF17891.1|  522|Drosophila melanogaster FI01120p
           protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 112 HNQKMMSFVE*CHLFFKIKLALASRILACXR 20
           H Q+     E CH FFKIK+ L S +  C +
Sbjct: 374 HKQQKPYMCEGCHDFFKIKVELQSHVEHCAK 404


>AY069782-1|AAL39927.1|  522|Drosophila melanogaster SD02478p
           protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 112 HNQKMMSFVE*CHLFFKIKLALASRILACXR 20
           H Q+     E CH FFKIK+ L S +  C +
Sbjct: 374 HKQQKPYMCEGCHDFFKIKVELQSHVEHCAK 404


>AE014296-3606|AAF51768.1|  522|Drosophila melanogaster CG11247-PB,
           isoform B protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 112 HNQKMMSFVE*CHLFFKIKLALASRILACXR 20
           H Q+     E CH FFKIK+ L S +  C +
Sbjct: 374 HKQQKPYMCEGCHDFFKIKVELQSHVEHCAK 404


>AE014296-3605|AAF51769.1|  522|Drosophila melanogaster CG11247-PA,
           isoform A protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 112 HNQKMMSFVE*CHLFFKIKLALASRILACXR 20
           H Q+     E CH FFKIK+ L S +  C +
Sbjct: 374 HKQQKPYMCEGCHDFFKIKVELQSHVEHCAK 404


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,704,040
Number of Sequences: 53049
Number of extensions: 324802
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1991467008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)