Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k04
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0387 + 24869594-24871480 31 1.1
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 29 3.5
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 29 3.5
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 29 3.5
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 29 4.6
08_01_0423 + 3740344-3740408,3740949-3741015,3742110-3742218,374... 28 6.1
07_01_0463 + 3502708-3503535 28 6.1
01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748... 28 6.1
10_08_0645 - 19562886-19564484 28 8.1
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678... 28 8.1
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225... 28 8.1
>04_04_0387 + 24869594-24871480
Length = 628
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -2
Query: 693 KKKMLDEEEGDDSQFKDEDNEEGEPKGKKAK 601
K++ ++E+ Q +DED ++ P+G+ AK
Sbjct: 557 KQEQTEDEDEQQEQIEDEDEQQESPRGRSAK 587
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKGKK 607
DEEE ++ + +DED+EE + K KK
Sbjct: 328 DEEEEEEDEDEDEDDEEEKSKPKK 351
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKGKKAKMS 595
DE+E ++ + +DED ++ E K K K S
Sbjct: 326 DEDEEEEEEDEDEDEDDEEEKSKPKKKS 353
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKGKKA 604
+EEE D+ + +D++ E+ +PK K A
Sbjct: 330 EEEEEDEDEDEDDEEEKSKPKKKSA 354
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 690 KKMLDEEEGDDSQFKDEDNEEGEPKGKKAK 601
K + + EE DD + +D+E GE KG K +
Sbjct: 434 KDVSESEEDDDEEDDSDDDENGEIKGGKGR 463
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKGKKAKMS 595
DEE+ DD + +DED E+G + +K S
Sbjct: 51 DEEDDDDDEDEDEDGEQGAIGNEGSKQS 78
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 690 KKMLDEEEGDDSQFKDEDNEEGEPKGKKAK 601
K +EEE ++ K E+N+E PK KKA+
Sbjct: 232 KDEAEEEEVSEADKKVEENKEETPKNKKAR 261
>08_01_0423 +
3740344-3740408,3740949-3741015,3742110-3742218,
3742320-3742447,3742899-3743324
Length = 264
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKGK 610
+EEE D+ +DED EEG+ G+
Sbjct: 224 EEEEEDNDDDEDEDEEEGQEDGE 246
>07_01_0463 + 3502708-3503535
Length = 275
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 693 KKKMLDEEEGDDSQFK-DEDNEEGEPKGKKAK 601
KKK DEEEG + K D+D +E E K +K K
Sbjct: 125 KKKDGDEEEGKKKEKKKDKDGDEKEGKKEKKK 156
>01_02_0053 +
10673264-10674510,10674552-10674576,10674802-10674886,
10675074-10675084
Length = 455
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 675 EEEGDDSQFKDEDNEEGE 622
EEEG D +D+D+EEGE
Sbjct: 397 EEEGTDESDEDDDSEEGE 414
>10_08_0645 - 19562886-19564484
Length = 532
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 500 GDGTTSPKWVSRRFVH 547
GDG SPKW S F H
Sbjct: 186 GDGAPSPKWTSAPFTH 201
>07_03_1126 -
24166758-24166879,24166948-24167386,24167708-24167875,
24168388-24168675,24169468-24169575,24169759-24169811,
24170033-24170192,24170353-24170442,24170902-24170953,
24171156-24171283
Length = 535
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Frame = -2
Query: 693 KKKMLDEEEGDDSQFKD-------EDNEEGEPKGKKAKM 598
KKK + EG D + KD +D EEGE + +KAK+
Sbjct: 305 KKKQREGNEGGDKENKDAEANKEEDDEEEGEEEEEKAKV 343
>01_01_0272 -
2249662-2249721,2250110-2250335,2250419-2250615,
2250707-2250955,2251047-2251176,2251473-2251564,
2251735-2251855,2251940-2252028,2252149-2252271,
2252379-2252506,2253039-2253147,2253701-2254000
Length = 607
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKGKKAKMS 595
D EE + D+D E EP GK+ ++S
Sbjct: 50 DAEEEGSGEVDDDDGEAAEPSGKEEEVS 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,792,556
Number of Sequences: 37544
Number of extensions: 296004
Number of successful extensions: 1197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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