Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15k04
(694 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK057442-1|BAB71488.1| 556|Homo sapiens protein ( Homo sapiens ... 31 3.9
BC003380-1|AAH03380.1| 268|Homo sapiens acidic (leucine-rich) n... 30 6.8
AY057381-1|AAL25814.1| 266|Homo sapiens lecuine-rich acidic pro... 30 6.8
AL138795-4|CAI22808.1| 268|Homo sapiens acidic (leucine-rich) n... 30 6.8
AL138795-3|CAI22809.1| 136|Homo sapiens acidic (leucine-rich) n... 30 6.8
AL138795-1|CAI22806.1| 220|Homo sapiens acidic (leucine-rich) n... 30 6.8
AK223469-1|BAD97189.1| 266|Homo sapiens acidic (leucine-rich) n... 30 6.8
AK095228-1|BAC04505.1| 218|Homo sapiens protein ( Homo sapiens ... 30 6.8
AK092672-1|BAC03942.1| 268|Homo sapiens mRNA. protein. 30 6.8
BC050463-1|AAH50463.1| 953|Homo sapiens conserved nuclear prote... 30 9.0
AK056632-1|BAB71237.1| 757|Homo sapiens protein ( Homo sapiens ... 30 9.0
>AK057442-1|BAB71488.1| 556|Homo sapiens protein ( Homo sapiens
cDNA FLJ32880 fis, clone TESTI2004122. ).
Length = 556
Score = 31.1 bits (67), Expect = 3.9
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 668 KEMILSSRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAWRP 525
+E +LS K+ ++ PR K R R M H P+R PR E T +P
Sbjct: 496 EEQLLSEAGKVDREGTPR-KPRSHRSMGVRMEHSPQRPPRTEPTGSQP 542
>BC003380-1|AAH03380.1| 268|Homo sapiens acidic (leucine-rich)
nuclear phosphoprotein 32 family, member E protein.
Length = 268
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKG 613
D+E+GD+ ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183
>AY057381-1|AAL25814.1| 266|Homo sapiens lecuine-rich acidic
protein-like protein protein.
Length = 266
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKG 613
D+E+GD+ ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183
>AL138795-4|CAI22808.1| 268|Homo sapiens acidic (leucine-rich)
nuclear phosphoprotein 32 family, member E protein.
Length = 268
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKG 613
D+E+GD+ ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183
>AL138795-3|CAI22809.1| 136|Homo sapiens acidic (leucine-rich)
nuclear phosphoprotein 32 family, member E protein.
Length = 136
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKG 613
D+E+GD+ ++E+NE G P+G
Sbjct: 30 DDEDGDEDDEEEEENEAGPPEG 51
>AL138795-1|CAI22806.1| 220|Homo sapiens acidic (leucine-rich)
nuclear phosphoprotein 32 family, member E protein.
Length = 220
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKG 613
D+E+GD+ ++E+NE G P+G
Sbjct: 114 DDEDGDEDDEEEEENEAGPPEG 135
>AK223469-1|BAD97189.1| 266|Homo sapiens acidic (leucine-rich)
nuclear phosphoprotein 32 family, member E variant
protein.
Length = 266
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKG 613
D+E+GD+ ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183
>AK095228-1|BAC04505.1| 218|Homo sapiens protein ( Homo sapiens
cDNA FLJ37909 fis, clone CTONG1000022, highly similar to
Mus musculus cerebellar postnatal development protein-1
(Cpd1) ).
Length = 218
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKG 613
D+E+GD+ ++E+NE G P+G
Sbjct: 114 DDEDGDEDDEEEEENEAGPPEG 135
>AK092672-1|BAC03942.1| 268|Homo sapiens mRNA. protein.
Length = 268
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 678 DEEEGDDSQFKDEDNEEGEPKG 613
D+E+GD+ ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183
>BC050463-1|AAH50463.1| 953|Homo sapiens conserved nuclear protein
NHN1 protein.
Length = 953
Score = 29.9 bits (64), Expect = 9.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 693 KKKMLDEEEGDDSQFKDEDNEEGEPK 616
KKK D+ E DD + D+D EEGE K
Sbjct: 186 KKKEDDDGEIDDGEIDDDDLEEGEVK 211
>AK056632-1|BAB71237.1| 757|Homo sapiens protein ( Homo sapiens
cDNA FLJ32070 fis, clone OCBBF1000119. ).
Length = 757
Score = 29.9 bits (64), Expect = 9.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 693 KKKMLDEEEGDDSQFKDEDNEEGEPK 616
KKK D+ E DD + D+D EEGE K
Sbjct: 186 KKKEDDDGEIDDGEIDDDDLEEGEVK 211
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,245,071
Number of Sequences: 237096
Number of extensions: 1668548
Number of successful extensions: 6415
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6163
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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