Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k04
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119628-1|AAM50282.1|  826|Drosophila melanogaster RE19835p pro...    30   2.6  
AE014298-2591|AAF48747.2|  826|Drosophila melanogaster CG5800-PA...    30   2.6  
BT004503-1|AAO42667.1| 2201|Drosophila melanogaster GH07949p pro...    30   3.4  
AY061181-1|AAL28729.1|  158|Drosophila melanogaster LD14807p pro...    30   3.4  
AE014298-2947|AAF49026.2| 2529|Drosophila melanogaster CG32529-P...    30   3.4  
AF132165-1|AAD34753.1|  737|Drosophila melanogaster unknown prot...    29   7.9  
AF017777-4|AAC28403.1|  737|Drosophila melanogaster penguin prot...    29   7.9  
AE014298-3120|AAF50828.1|  737|Drosophila melanogaster CG1685-PA...    29   7.9  

>AY119628-1|AAM50282.1|  826|Drosophila melanogaster RE19835p
           protein.
          Length = 826

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 678 DEEEGDDSQFKDEDNEEGEPKGKKAKMS 595
           D+E+ DDS   D+D  + EP  KK+K++
Sbjct: 781 DDEKADDSDGDDDDVSDDEPAYKKSKLT 808


>AE014298-2591|AAF48747.2|  826|Drosophila melanogaster CG5800-PA
           protein.
          Length = 826

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 678 DEEEGDDSQFKDEDNEEGEPKGKKAKMS 595
           D+E+ DDS   D+D  + EP  KK+K++
Sbjct: 781 DDEKADDSDGDDDDVSDDEPAYKKSKLT 808


>BT004503-1|AAO42667.1| 2201|Drosophila melanogaster GH07949p
           protein.
          Length = 2201

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 693 KKKMLDEEEGDDSQFKDEDNEEGEPKGKK 607
           KKK +  EE DD + K+++ E+ +PK  K
Sbjct: 454 KKKSVQVEESDDEEAKEKEKEKEKPKPPK 482


>AY061181-1|AAL28729.1|  158|Drosophila melanogaster LD14807p
           protein.
          Length = 158

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 656 LSSRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTA 534
           L  R ++     PR K+R  R+ P+ + HRP+R     +TA
Sbjct: 56  LLPRRQLPAMTAPRKKRRPRRLPPQQRRHRPKRPSLQAKTA 96


>AE014298-2947|AAF49026.2| 2529|Drosophila melanogaster CG32529-PA,
           isoform A protein.
          Length = 2529

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 693 KKKMLDEEEGDDSQFKDEDNEEGEPKGKK 607
           KKK +  EE DD + K+++ E+ +PK  K
Sbjct: 782 KKKSVQVEESDDEEAKEKEKEKEKPKPPK 810


>AF132165-1|AAD34753.1|  737|Drosophila melanogaster unknown
           protein.
          Length = 737

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 675 EEEGDDSQFKDEDNEEGEPKGKKAK 601
           ++EGD+ + K+   ++ EPK KKAK
Sbjct: 595 DDEGDEKEQKEAAADDAEPKVKKAK 619


>AF017777-4|AAC28403.1|  737|Drosophila melanogaster penguin
           protein.
          Length = 737

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 675 EEEGDDSQFKDEDNEEGEPKGKKAK 601
           ++EGD+ + K+   ++ EPK KKAK
Sbjct: 595 DDEGDEKEQKEAAADDAEPKVKKAK 619


>AE014298-3120|AAF50828.1|  737|Drosophila melanogaster CG1685-PA
           protein.
          Length = 737

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 675 EEEGDDSQFKDEDNEEGEPKGKKAK 601
           ++EGD+ + K+   ++ EPK KKAK
Sbjct: 595 DDEGDEKEQKEAAADDAEPKVKKAK 619


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,542,641
Number of Sequences: 53049
Number of extensions: 507854
Number of successful extensions: 2211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2152
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)