Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k04
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.90 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 693 KKKMLDEEEGDDSQFKDEDNEEGE 622
           +K+  ++ EG D +  DE+NEE E
Sbjct: 267 RKRRQNDGEGADDRDDDEENEEEE 290


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 137 CLIYALT*KYICVNTRTHFNLKFDIHNAI 223
           C IYA   +++CVN   +   K  +HN +
Sbjct: 372 CFIYASLLEFVCVN---YVGRKRPMHNVV 397


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 137 CLIYALT*KYICVNTRTHFNLKFDIHNAI 223
           C IYA   +++CVN   +   K  +HN +
Sbjct: 341 CFIYASLLEFVCVN---YVGRKRPMHNVV 366


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 137 CLIYALT*KYICVNTRTHFNLKFDIHNAI 223
           C IYA   +++CVN   +   K  +HN +
Sbjct: 392 CFIYASLLEFVCVN---YVGRKRPMHNVV 417


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 137 CLIYALT*KYICVNTRTHFNLKFDIHNAI 223
           C IYA   +++CVN   +   K  +HN +
Sbjct: 341 CFIYASLLEFVCVN---YVGRKRPMHNVV 366


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 587 PKAKLHRPRRMPRNEQTAWRPILG*SY 507
           P   +H P   P N Q A + I+G  Y
Sbjct: 457 PTRYIHEPWNAPLNVQRAAKCIIGKDY 483


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 681 LDEEEGDDSQFKDEDNEEGEPKGKKAK 601
           +DE++ DD    D+D+ E    GK A+
Sbjct: 389 VDEDDDDDGDDDDDDDVEA-ANGKPAE 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,913
Number of Sequences: 438
Number of extensions: 3251
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)