Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15k02
         (739 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    29   0.11 
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    26   1.4  
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    24   4.3  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    24   4.3  
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    24   4.3  
AY345586-1|AAR09143.1|  427|Anopheles gambiae myosuppressin rece...    23   7.4  
AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.         23   7.4  
AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.         23   7.4  
AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.         23   7.4  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   9.8  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 29.5 bits (63), Expect = 0.11
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 334 CWPPNALLCKC--CCCSNYWCVPADWCTASAKTCRP 435
           C  P+   C C  C C   W  PA  C AS +TC P
Sbjct: 603 CSGPDHGRCVCGQCECREGWTGPACDCRASNETCMP 638


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
 Frame = +1

Query: 298 CSC*NLC--IATSPCWPPNALLCKC--CCCSNYWCVPADWCTASAKTCR 432
           C C N C  I  S C  P+  +C C  C C + W      CT     C+
Sbjct: 557 CEC-NECATIDGSICGGPDHGICTCGTCSCFDSWSGDNCECTTDTTGCK 604


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 504 PWPRWTSV 481
           PWPRWT V
Sbjct: 591 PWPRWTGV 598


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 504 PWPRWTSV 481
           PWPRWT V
Sbjct: 591 PWPRWTGV 598


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 504 PWPRWTSV 481
           PWPRWT V
Sbjct: 477 PWPRWTGV 484


>AY345586-1|AAR09143.1|  427|Anopheles gambiae myosuppressin
           receptor protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 76  TKSIWRPIRLQPWK*CRSDWCRRRQTWC 159
           T SIW  + L  W+     + +R + WC
Sbjct: 143 TISIWLTVTLAIWRYIAVAYPQRNRQWC 170


>AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 194 PTKKQSHNHHGEHQVWRRRHQ 132
           P+    H HH  H   RRR +
Sbjct: 21  PSASTKHRHHSRHHHRRRRER 41


>AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 194 PTKKQSHNHHGEHQVWRRRHQ 132
           P+    H HH  H   RRR +
Sbjct: 21  PSASTKHRHHSRHHHRRRRER 41


>AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 194 PTKKQSHNHHGEHQVWRRRHQ 132
           P+    H HH  H   RRR +
Sbjct: 21  PSASTKHRHHSRHHHRRRRER 41


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 242 NLSRQLERCQRLVVYCPTKKQSHNHHGEHQVWRRRH 135
           N+  + E  Q+ ++    ++Q H HH  HQ   + H
Sbjct: 625 NIFSEDEEDQQHLLQQQQQQQQHQHHQAHQHQGQHH 660


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,101
Number of Sequences: 2352
Number of extensions: 16599
Number of successful extensions: 42
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)