Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j19
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0612 + 18023354-18023916,18024046-18024805                       30   1.2  
09_02_0342 + 7464679-7464691,7466689-7468136                           29   2.8  
04_03_0614 + 18038848-18040287                                         29   2.8  
07_03_0872 - 22190468-22190575,22190652-22190910,22191005-221911...    28   5.0  
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299...    27   8.7  
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146...    27   8.7  

>04_03_0612 + 18023354-18023916,18024046-18024805
          Length = 440

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 94  LNCKHTVFIFLSNHSHLPNECFKEIDVNTDSVNTNIFLLFTHKPNSGLYILTSCCSVM 267
           L C      FL+  S  PN    EID +  +          H  N GL++L+SCC+++
Sbjct: 45  LGCGLATEDFLALCSRFPNLLKVEIDYSGSTPGNG-----NHIDNQGLFVLSSCCTLL 97


>09_02_0342 + 7464679-7464691,7466689-7468136
          Length = 486

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 166 IDVNTDSVNTNIFLLFTHKPNSGLYILTSCCSVMQVSTPRSN 291
           +D+NT +V  N+ +L  H P+ G  +   C  + Q++   S+
Sbjct: 340 VDMNTSTVLRNLMMLEQHNPSLGSQVTAYCYFLSQLAGTASD 381


>04_03_0614 + 18038848-18040287
          Length = 479

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 136 SHLPNECFKEIDVNTDSVNTNIFLLFTHKPNSGLYILTSCCSVM 267
           S  PN    EID +  +          H  N GL++LTSCC+++
Sbjct: 59  SRFPNLLKVEIDYSGSTPGNG-----NHIDNQGLFVLTSCCTLL 97


>07_03_0872 -
           22190468-22190575,22190652-22190910,22191005-22191108,
           22191245-22191423,22191565-22191670,22191797-22191940,
           22192024-22192179,22192274-22192378,22192483-22192545,
           22192993-22192995
          Length = 408

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -3

Query: 592 VYLSPAQILNLNLPLAYQKSVL-----FASNSAKVNERIRRLAR 476
           VYL P       + L YQ  VL     FA + AK+N R+R LAR
Sbjct: 53  VYLFPNYHPTRMITLVYQPFVLTTTALFAYHEAKINTRMRNLAR 96


>02_03_0161 +
           15828887-15828985,15829066-15829686,15829759-15829908,
           15829994-15830389,15830455-15830487,15830553-15830693,
           15830793-15830924,15830999-15831082,15831159-15831461,
           15831543-15831734,15831805-15831942,15832019-15832143,
           15832223-15832319
          Length = 836

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 CEWLDKNIKTVCLQLRKLCINNKQHTTCLPY 48
           C++LD  I T  + +   CI N++    + Y
Sbjct: 454 CQFLDNKISTKLISIENTCIQNRRDIQAIKY 484


>02_01_0224 -
           1461924-1462227,1462602-1462798,1463059-1463213,
           1464101-1464207,1464289-1464375,1465332-1465414,
           1465959-1466027,1466332-1466658,1466744-1466957,
           1467170-1467267,1467516-1467554,1467672-1468160
          Length = 722

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 245 KMYSPEFGLCVNSKNMFVLTESVLTSISLKHSFGKCEWLDKNIKTVCLQ 99
           ++ SP+ GLC+N +N    +E +  S+  +    K     K IKTV +Q
Sbjct: 257 ELSSPQDGLCLNQRNQTYASEVLEESVRFESKGSK----HKEIKTVGVQ 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,091,484
Number of Sequences: 37544
Number of extensions: 221982
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)