Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j19
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical
           protein M28.1 protein.
          Length = 647

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 61  VVCCLLL--IQSFLNCKHTVFIFLSNHSHLPNECFKE 165
           V  CL L  IQS  NC  +VF+FL+    + N  FK+
Sbjct: 600 VFFCLYLTKIQSKQNCTQSVFLFLNIFDTVFNSIFKK 636


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 82  IQSFLNCKHTVFIFLSNHSHLPNECFKEIDVNTDSVNTNIFLLF 213
           +++ LN K T+F    +H+ L N   + + ++ D   T + +LF
Sbjct: 1   MEAALNLKPTLFYAGEHHNPLGNRQRENVSLSQDDTTTRLVMLF 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,729
Number of Sequences: 27780
Number of extensions: 233177
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)