Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j19
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.76 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.76 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.3  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 157 FKEIDVNTDSVNTNIFLLFTH-KPNSGLYILTSCCSVMQV 273
           FKE ++NT  +N N+F      + N  LY + +  +  Q+
Sbjct: 475 FKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQI 514


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 157 FKEIDVNTDSVNTNIFLLFTH-KPNSGLYILTSCCSVMQV 273
           FKE ++NT  +N N+F      + N  LY + +  +  Q+
Sbjct: 475 FKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQI 514


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 133 HSHLPNECFKEIDVNTDSVNTNIFLLFTHKPNSG 234
           HS LP   F  +  + +SVN      F + P  G
Sbjct: 110 HSRLPGRNFNLLRADANSVNELESQGFNYDPGRG 143


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 312 KQELCKAVAARG*HLHYTTATC 247
           ++ELC     R    HY   TC
Sbjct: 183 QEELCLVCGDRASGYHYNALTC 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,320
Number of Sequences: 438
Number of extensions: 2625
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)