Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j15
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   5.3  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    26   5.3  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    26   5.3  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   5.3  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   9.3  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   9.3  

>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 238 DELITNRRSVCLLTFEMTSATAI 306
           D+L++   +  LLTFEM +AT +
Sbjct: 465 DDLMSTEHAEALLTFEMPTATTV 487


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 229 SGTDELITNRRSVCLLTFEMTSATAI 306
           S  +E ++  RS CLL +EM S  A+
Sbjct: 324 SSLNEALSQTRSACLLFYEMESPLAL 349


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 368 HVSVQVFLSKPGSVNTPHLYPIAVADVISNVNKQTDRLL 252
           H+S+++F+S P   N  +   +AV    ++  K+  RLL
Sbjct: 26  HISLRIFISPPSIANIWNSILLAVPKKKTSYTKKRSRLL 64


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 245 SSSVPEMAPVWTPYCLRPGYIKIYFPNCVFNCELLIFKRHQSQSNHYLHAI 93
           S ++  + PV    C +  Y  ++FP C   C LL     Q    H++ ++
Sbjct: 301 SRTIETIYPVVLKMCTKTKYWNVFFPFC---CTLLCLSPKQFFLKHWISSL 348


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 204 VGCPHWRHLW 233
           +GCPHW   W
Sbjct: 184 IGCPHWGKFW 193


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 422 DFVFYSK*DINHFPMKYFHVSVQVFLSKPGSVNTPHLYP---IAVADVISNVNKQTDRLL 252
           D   + + DI+H P+  +   +   LSK   V+   +YP    +++   +++N    RL 
Sbjct: 19  DLPVFREADIHHNPVDVYRSYISSELSKINGVDVSLIYPALETSISKDSADLNLPVPRLR 78

Query: 251 VMSSSVPEMAPVW 213
           V      E+A  W
Sbjct: 79  V-KGKPQELAQKW 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,438
Number of Sequences: 5004
Number of extensions: 52841
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)