Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j15
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0694 + 13013966-13014361                                         30   1.4  
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    28   7.2  
10_08_0264 - 16320307-16320483,16321181-16321519                       27   9.6  
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558...    27   9.6  
07_03_0746 - 21169858-21169929,21170087-21170235,21170498-211717...    27   9.6  

>02_02_0694 + 13013966-13014361
          Length = 131

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 131 RHQSQSNHYLHAISRGHNTYSRTGRPPAPA 42
           RH     H+ H   RGH+ ++R G PP  A
Sbjct: 76  RHHHHHRHHGHHHHRGHDRWNRKGVPPTAA 105


>01_07_0124 + 41212728-41212922,41215156-41215210,41215336-41217128,
            41217363-41217521,41217883-41218054,41218173-41218471,
            41219060-41219368
          Length = 993

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 477  ILMQVFSNLNTAASQAVRMLSSIFKTWFLTRVFVRTRTXKALVFNL 614
            +  QVF+ +N+   + + + S IF +W  + V   T   + ++  L
Sbjct: 888  VFCQVFNEVNSREMEKINVFSGIFSSWIFSAVVGVTAGFQVIMVEL 933


>10_08_0264 - 16320307-16320483,16321181-16321519
          Length = 171

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 383 PMKYFHVSVQVFLSKPGSVNTPHLYPIAVADVISNVNKQTDRLLVM 246
           PM+Y H ++ ++LS     + P  + IAV  +I+ V  +T   +++
Sbjct: 64  PMRYTHYNISIWLSLNAVGSLPIAFAIAVYIMITPVAAKTSPAVIV 109


>09_04_0151 -
           15154063-15154296,15155616-15155660,15155749-15155820,
           15155932-15156024,15156282-15156351,15156716-15156912,
           15156946-15157215,15158620-15158757,15158841-15158930,
           15159041-15159247,15159987-15160154,15160300-15160503,
           15160584-15160670,15160748-15160861,15161689-15161835,
           15161914-15162063,15162211-15162276,15162376-15162480,
           15162625-15162798,15162930-15163154,15163534-15163590,
           15163858-15164019,15164234-15164302,15164391-15164471,
           15164823-15164925,15165011-15165156,15165285-15165359,
           15165441-15165508,15165586-15165667,15165745-15165858,
           15166358-15166476,15166692-15166781,15166862-15166988
          Length = 1382

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 335 GSVNTPHLYPIAVADVISNVNKQTDRLLVMSSSVPEM 225
           GS N P + P+AV D+   + +  DR  ++  S  E+
Sbjct: 91  GSGNEPGIIPLAVHDLFRTIEEHLDREFLLRMSYMEI 127


>07_03_0746 -
           21169858-21169929,21170087-21170235,21170498-21171793,
           21171899-21171971
          Length = 529

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +2

Query: 398 LIWNKKQNLICEFIRFCFLCFTEYGLNSYASI-FK--FEHRGVSSSTYAFKYFQNLVFDP 568
           L W       C  I+    C+    L ++AS  F   ++ +G +S T  F     +V+ P
Sbjct: 395 LDWACNNGADCSAIQLGKACYEPNTLVAHASYAFNDYYQRKGQASGTCNFNGVAFIVYKP 454

Query: 569 GICPYSYLXSPGIQFGKYVS 628
              PYS + S  I+  K+++
Sbjct: 455 SPTPYSAVHSALIRTPKWLT 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,803
Number of Sequences: 37544
Number of extensions: 303674
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)