Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j15
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone...    31   0.93 
AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.      31   0.93 
AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.      31   0.93 
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL032640-4|CAA21642.1|  369|Caenorhabditis elegans Hypothetical ...    28   6.5  
U41032-5|AAQ62460.1|  403|Caenorhabditis elegans Protein kinase ...    27   8.6  

>Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical
           protein F44A6.2 protein.
          Length = 534

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = -1

Query: 450 KQNRINSQIRFCFLFQIRYKSFSYEVFSCE-CSGVFEQTW*RKYASSLPYSC---G*CHF 283
           +++ I   I FC +   +   + Y V SCE C G F ++  RK    + Y C     C  
Sbjct: 140 QRHHIGKAISFCKVCGDKASGYHYGVTSCEGCKGFFRRSIQRK----IDYRCLKQQVCEI 195

Query: 282 KRQQTDRPPVSNELVCPRDGASVDTL 205
           KR+  +R        C   G S D++
Sbjct: 196 KRESRNRCQYCRFKKCLDSGMSKDSV 221


>U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone
           receptor familymember CNR14 protein.
          Length = 534

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = -1

Query: 450 KQNRINSQIRFCFLFQIRYKSFSYEVFSCE-CSGVFEQTW*RKYASSLPYSC---G*CHF 283
           +++ I   I FC +   +   + Y V SCE C G F ++  RK    + Y C     C  
Sbjct: 140 QRHHIGKAISFCKVCGDKASGYHYGVTSCEGCKGFFRRSIQRK----IDYRCLKQQVCEI 195

Query: 282 KRQQTDRPPVSNELVCPRDGASVDTL 205
           KR+  +R        C   G S D++
Sbjct: 196 KRESRNRCQYCRFKKCLDSGMSKDSV 221


>AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.
          Length = 553

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = -1

Query: 450 KQNRINSQIRFCFLFQIRYKSFSYEVFSCE-CSGVFEQTW*RKYASSLPYSC---G*CHF 283
           +++ I   I FC +   +   + Y V SCE C G F ++  RK    + Y C     C  
Sbjct: 137 QRHHIGKAISFCKVCGDKASGYHYGVTSCEGCKGFFRRSIQRK----IDYRCLKQQVCEI 192

Query: 282 KRQQTDRPPVSNELVCPRDGASVDTL 205
           KR+  +R        C   G S D++
Sbjct: 193 KRESRNRCQYCRFKKCLDSGMSKDSV 218


>AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.
          Length = 556

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = -1

Query: 450 KQNRINSQIRFCFLFQIRYKSFSYEVFSCE-CSGVFEQTW*RKYASSLPYSC---G*CHF 283
           +++ I   I FC +   +   + Y V SCE C G F ++  RK    + Y C     C  
Sbjct: 140 QRHHIGKAISFCKVCGDKASGYHYGVTSCEGCKGFFRRSIQRK----IDYRCLKQQVCEI 195

Query: 282 KRQQTDRPPVSNELVCPRDGASVDTL 205
           KR+  +R        C   G S D++
Sbjct: 196 KRESRNRCQYCRFKKCLDSGMSKDSV 221


>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical
           protein T08G11.1b protein.
          Length = 3185

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 568 GYLSVLVLXKPWYSIWQVCLIATI 639
           GYLS LVL  PW +++   +IAT+
Sbjct: 60  GYLSSLVLKIPWKNLYNEPVIATV 83


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical
           protein T08G11.1a protein.
          Length = 3212

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 568 GYLSVLVLXKPWYSIWQVCLIATI 639
           GYLS LVL  PW +++   +IAT+
Sbjct: 60  GYLSSLVLKIPWKNLYNEPVIATV 83


>AL032640-4|CAA21642.1|  369|Caenorhabditis elegans Hypothetical
           protein Y43F8A.4 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 438 INSQIR--FCFLFQIRYKSFSYEVFSCECS 355
           INS I   FCF    +Y+   + +F C+C+
Sbjct: 325 INSSIHCFFCFFLSSQYRLAFWSIFGCKCA 354


>U41032-5|AAQ62460.1|  403|Caenorhabditis elegans Protein kinase
           protein 25, isoformc protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 149 ELLIFKRHQSQSNHYLHAISRGHNTYSRTGRPP 51
           +LL+F RHQ   +H L  I+   N Y +    P
Sbjct: 194 QLLLFTRHQLLRHHQLRCITNSSNGYPQLNGYP 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,173,376
Number of Sequences: 27780
Number of extensions: 292003
Number of successful extensions: 742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)