Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j15
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   3.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   3.3  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   7.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   7.7  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/67 (19%), Positives = 29/67 (43%)
 Frame = -2

Query: 293 DVISNVNKQTDRLLVMSSSVPEMAPVWTPYCLRPGYIKIYFPNCVFNCELLIFKRHQSQS 114
           DV+S   K+  ++ + S     +A V          +++Y+P+       +I + H  + 
Sbjct: 239 DVVSGTQKKKRKIYLFSGHESNIASVLHA-------LQLYYPHVPEYSSSIIMELHNIEG 291

Query: 113 NHYLHAI 93
            HY+  +
Sbjct: 292 THYVKIV 298


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/67 (19%), Positives = 29/67 (43%)
 Frame = -2

Query: 293 DVISNVNKQTDRLLVMSSSVPEMAPVWTPYCLRPGYIKIYFPNCVFNCELLIFKRHQSQS 114
           DV+S   K+  ++ + S     +A V          +++Y+P+       +I + H  + 
Sbjct: 254 DVVSGTQKKKRKIYLFSGHESNIASVLHA-------LQLYYPHVPEYSSSIIMELHNIEG 306

Query: 113 NHYLHAI 93
            HY+  +
Sbjct: 307 THYVKIV 313


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 66  DRPPASPRGDKY*HQRC 16
           D PP  P G K+   RC
Sbjct: 56  DVPPRCPPGSKFIKNRC 72


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 433 IYTILLLMLHGIRVEFLCK 489
           ++ I+ ++LHG  + F+CK
Sbjct: 11  LFVIINVLLHGQVICFVCK 29


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 66  DRPPASPRGDKY*HQRC 16
           D PP  P G K+   RC
Sbjct: 56  DVPPRCPPGSKFIKNRC 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,737
Number of Sequences: 438
Number of extensions: 3741
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)