Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j14
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    58   8e-10

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 58.4 bits (135), Expect = 8e-10
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
 Frame = -3

Query: 627 KKQYEPLTRWXGDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKADD 448
           +K+YE   +     LG  + +  V               +GW+ NMER+  + A +   D
Sbjct: 540 EKEYEEFAKQLKTILGDKVEKVVVSNKIVGSPCLLTTGQYGWSANMERIMKAQALR---D 596

Query: 447 PQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHT-LYRTAALRSGYVLQE 271
                +++ +K  EINP+ PI+AEL ++V+             T LY TA L SG+ L +
Sbjct: 597 TSMSAYMSSRKTFEINPKSPIIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDD 656

Query: 270 GQAVLFADSVETMLQRTLGL 211
             A  +A  +  ++  +LGL
Sbjct: 657 PSA--YAQRINRLI--SLGL 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 890,733
Number of Sequences: 5004
Number of extensions: 7906
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)