Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j14
         (629 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075384-1|AAL68222.1|  787|Drosophila melanogaster LD23641p pro...   138   8e-33
AE014297-4205|AAF56765.1|  787|Drosophila melanogaster CG5520-PA...   138   8e-33
X03810-2|CAA27435.1|  717|Drosophila melanogaster hsp 82 protein.      52   5e-07
AY122080-1|AAM52592.1|  717|Drosophila melanogaster AT20544p pro...    52   5e-07
AE014296-590|AAF47734.1|  717|Drosophila melanogaster CG1242-PA ...    52   5e-07

>AY075384-1|AAL68222.1|  787|Drosophila melanogaster LD23641p protein.
          Length = 787

 Score =  138 bits (333), Expect = 8e-33
 Identities = 71/140 (50%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
 Frame = -3

Query: 627  KKQYEPLTRWXGD-KLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKAD 451
            K  +EPL +W  D  L   I++A V               FGWTGNMERLA+SNAHQK+D
Sbjct: 609  KSTFEPLVKWLNDVALKDQISKAQVSERLSNSPCALVAGVFGWTGNMERLAMSNAHQKSD 668

Query: 450  DPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQE 271
            DPQR ++L QKK LEINPRHP++ ELLRRV+           A  ++RTA LRSGY+LQE
Sbjct: 669  DPQRTYYLNQKKTLEINPRHPLMRELLRRVEADEADDTAKDMAVMMFRTATLRSGYMLQE 728

Query: 270  GQAVLFADSVETMLQRTLGL 211
                 FADS+E M+++TLG+
Sbjct: 729  TSQ--FADSIEQMMRQTLGV 746


>AE014297-4205|AAF56765.1|  787|Drosophila melanogaster CG5520-PA
            protein.
          Length = 787

 Score =  138 bits (333), Expect = 8e-33
 Identities = 71/140 (50%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
 Frame = -3

Query: 627  KKQYEPLTRWXGD-KLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKAD 451
            K  +EPL +W  D  L   I++A V               FGWTGNMERLA+SNAHQK+D
Sbjct: 609  KSTFEPLVKWLNDVALKDQISKAQVSERLSNSPCALVAGVFGWTGNMERLAMSNAHQKSD 668

Query: 450  DPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQE 271
            DPQR ++L QKK LEINPRHP++ ELLRRV+           A  ++RTA LRSGY+LQE
Sbjct: 669  DPQRTYYLNQKKTLEINPRHPLMRELLRRVEADEADDTAKDMAVMMFRTATLRSGYMLQE 728

Query: 270  GQAVLFADSVETMLQRTLGL 211
                 FADS+E M+++TLG+
Sbjct: 729  TSQ--FADSIEQMMRQTLGV 746


>X03810-2|CAA27435.1|  717|Drosophila melanogaster hsp 82 protein.
          Length = 717

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 37/139 (26%), Positives = 59/139 (42%)
 Frame = -3

Query: 627 KKQYEPLTRWXGDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKADD 448
           K ++E L +     L + + +  V               FGW+ NMER+  + A +   D
Sbjct: 550 KAKFESLCKLMKSILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALR---D 606

Query: 447 PQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQEG 268
                ++  KK LEINP HPIV  L ++                L+ T+ L SG+ L   
Sbjct: 607 TATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSP 666

Query: 267 QAVLFADSVETMLQRTLGL 211
           Q  + A  +  M++  LG+
Sbjct: 667 Q--VHASRIYRMIKLGLGI 683


>AY122080-1|AAM52592.1|  717|Drosophila melanogaster AT20544p
           protein.
          Length = 717

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 37/139 (26%), Positives = 59/139 (42%)
 Frame = -3

Query: 627 KKQYEPLTRWXGDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKADD 448
           K ++E L +     L + + +  V               FGW+ NMER+  + A +   D
Sbjct: 550 KAKFESLCKLMKSILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALR---D 606

Query: 447 PQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQEG 268
                ++  KK LEINP HPIV  L ++                L+ T+ L SG+ L   
Sbjct: 607 TATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSP 666

Query: 267 QAVLFADSVETMLQRTLGL 211
           Q  + A  +  M++  LG+
Sbjct: 667 Q--VHASRIYRMIKLGLGI 683


>AE014296-590|AAF47734.1|  717|Drosophila melanogaster CG1242-PA
           protein.
          Length = 717

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 37/139 (26%), Positives = 59/139 (42%)
 Frame = -3

Query: 627 KKQYEPLTRWXGDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKADD 448
           K ++E L +     L + + +  V               FGW+ NMER+  + A +   D
Sbjct: 550 KAKFESLCKLMKSILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALR---D 606

Query: 447 PQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQEG 268
                ++  KK LEINP HPIV  L ++                L+ T+ L SG+ L   
Sbjct: 607 TATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSP 666

Query: 267 QAVLFADSVETMLQRTLGL 211
           Q  + A  +  M++  LG+
Sbjct: 667 Q--VHASRIYRMIKLGLGI 683


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,302,380
Number of Sequences: 53049
Number of extensions: 103680
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)