Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j14
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    99   2e-21
Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    52   4e-07

>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
 Frame = -3

Query: 627 KKQYEPLTRWXGDK-LGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKAD 451
           +++++PLT W  +  L   I +A V              ++GW+GNMER+  S A+ KA 
Sbjct: 589 EEEFKPLTDWLKETALKDLIEKAVVSQRLVKSPSALVASSYGWSGNMERIMKSQAYAKAK 648

Query: 450 DPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQE 271
           DP +  + TQKK  EINPRHP++ ELL+RV            A  L+ TA LRSG+ LQ+
Sbjct: 649 DPTQDFYATQKKTFEINPRHPVIKELLKRVTASEEDTTAASTAKLLFETATLRSGFSLQD 708

Query: 270 GQAVLFADSVETMLQRTL 217
              V FAD +E +L+++L
Sbjct: 709 --QVGFADRIEAVLRQSL 724


>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 36/122 (29%), Positives = 52/122 (42%)
 Frame = -3

Query: 627 KKQYEPLTRWXGDKLGSWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKADD 448
           K  YE L +   D L   + +  V               +GW+ NMER+  + A +   D
Sbjct: 535 KVAYENLCKVIKDILEKKVEKVGVSNRLVSSPCCIVTSEYGWSANMERIMKAQALR---D 591

Query: 447 PQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGYVLQEG 268
                ++  KK LEINP H I+  L  RV+              L+ TA L SG+ L+E 
Sbjct: 592 SSTMGYMAAKKHLEINPDHAIMKTLRDRVEVDKNDKTVKDLVVLLFETALLASGFSLEEP 651

Query: 267 QA 262
           Q+
Sbjct: 652 QS 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,074,306
Number of Sequences: 27780
Number of extensions: 48150
Number of successful extensions: 166
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)