Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j13
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    30   0.26 
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    27   1.4  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.3  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   5.7  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   5.7  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   7.5  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   7.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.5  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    25   9.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   9.9  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   9.9  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 262 TPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQIGKTQ 83
           TP K     ++  K+D +  R + ++ + E   A  + E+LL  +   D Q +I +G+T 
Sbjct: 461 TPVKVAGRSEQSNKKDTEFARTKSYREQREFLPAFAVREQLL--SVIRDNQVLIVVGETG 518

Query: 82  VNRFTY--KFKYNSG 44
             + T   +F Y  G
Sbjct: 519 SGKTTQLAQFLYEDG 533


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 515 IEICLPDFICNNSYKNADI*TCFI-VTKHAE 426
           ++IC    IC+N YKNA    C I  T+H E
Sbjct: 168 LKICTDVLICSNDYKNALWILCLIKETQHNE 198


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +3

Query: 210 STSLLYSSFKSITALVGVSILKIK*LASLWVIPCAVDL*GIGRNPKFSMFL---MIPPQS 380
           S + L +S  S +ALV +  L +      WV  C ++      N +F++ +   + P + 
Sbjct: 522 SDAFLTNSNSSESALVHMQKLNLPDFTPSWVKRCVIETFAKFPNDRFNVIVKPALNPAER 581

Query: 381 ---NIACEILFNEVFNSGFGMFRNN 446
               I C    NE F +G G    N
Sbjct: 582 MTVRICCHDCINEYFTAGPGFTFGN 606


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 542 LNLKLIPYYIEICLPDFICNN-SYKNADI 459
           L L +IPY+ E+ L  F C +  +KNA +
Sbjct: 49  LLLTVIPYFREVVLMSFECPHCGFKNAQV 77


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 530 LIPYYIEICLPDFICNNSYKNADI*TCFIVTKHAET*IK-NFIEEDLTCYIRLR 372
           ++ YYI  C+P+F    SY+        I  K  ET +   F E+  T  I+L+
Sbjct: 323 IVEYYILQCIPNF---RSYEEVQNIWTIICEKLVETILSVAFTEQSTTTIIKLK 373


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 310 HGMTHKEANYFIFKIDTPTKAVID 239
           HG+T KE    I+KI T T A +D
Sbjct: 177 HGITEKEELQHIYKILTLTPASLD 200


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -3

Query: 532 N*YHITSKFVFQTLYVIIRIKMPTYELALLLR 437
           N YH+    + +  ++++RIK+   E++++ R
Sbjct: 179 NKYHLKDVIIGKIYFILVRIKVQRMEVSIIRR 210


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 524  PYYIEICLPDFICNNSYKNAD 462
            P+Y   CL + +CN++ K  D
Sbjct: 1057 PHYFAHCLSEVVCNDNSKMGD 1077


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 265 DTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKAC 158
           DT  K V DL     +D   VR  FF   +E++K+C
Sbjct: 211 DTDVKIVNDLCSFVPKDW--VRDEFFDTLKEKKKSC 244


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 421 QVSACFVTIKQVHMSAFLYELLHIKSG 501
           QV ACF  I Q    A L EL + K+G
Sbjct: 67  QVYACFRLISQAQRGATLQELDYNKAG 93


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 419 IKNFIEEDLTCYIRLRRNHQKHRKFR 342
           ++N++  +    +RL+RN  KHR+ R
Sbjct: 198 LRNYVHLEEQRRLRLKRNAAKHRQLR 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,216
Number of Sequences: 5004
Number of extensions: 46037
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)