Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j13
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.      31   0.74 
AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstrea...    31   0.74 
Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical pr...    30   0.97 
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      28   5.2  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    28   5.2  
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    27   6.9  
Z73905-2|CAA98109.3|  529|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.
          Length = 481

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -3

Query: 241 DLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQIGKTQVNRFTYK 62
           DL E  KR +D ++    KV+E    +   E ELL     +   K++     +V+ F   
Sbjct: 53  DLMERLKRAIDPIQMDSCKVRESNIDSVIFEAELLSLGIMQKTMKILDGFSMKVSGFAEP 112

Query: 61  FKYNSGLD*LSFP 23
            K  +    L FP
Sbjct: 113 LKVKTKEAKLDFP 125


>AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstream,
           human gene xe7related protein 7 protein.
          Length = 495

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -3

Query: 241 DLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQIGKTQVNRFTYK 62
           DL E  KR +D ++    KV+E    +   E ELL     +   K++     +V+ F   
Sbjct: 53  DLMERLKRAIDPIQMDSCKVRESNIDSVIFEAELLSLGIMQKTMKILDGFSMKVSGFAEP 112

Query: 61  FKYNSGLD*LSFP 23
            K  +    L FP
Sbjct: 113 LKVKTKEAKLDFP 125


>Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical
           protein T13F3.8 protein.
          Length = 212

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
 Frame = -3

Query: 499 QTLYVIIRIKMPTYELALLLRNMPKPELKTSLKRISHA-IFDCGGIIRNIENLGFRPMPY 323
           Q L +II + + T  L L  +   K + K  ++ +S   +    G+  N  N+G  P P 
Sbjct: 9   QLLQLIIWMSVLTASLHLC-KKKGKAKPKAKVREMSTVKMTTTTGLTTNNVNIG-NPAPE 66

Query: 322 KSTAHGMTHK--EANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLE 149
           +        K  E N    K D P K     +EE K++     ++  +VKEEE+K  +  
Sbjct: 67  EKKKEEKVEKKPEENKEAEKKDEPKKEEEKKEEEKKKEEKKEEEKKEEVKEEEKKDDSKR 126

Query: 148 EE 143
           +E
Sbjct: 127 DE 128


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 244  IDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLP 134
            I ++EE K D       + ++ E E+K CT++EE +P
Sbjct: 1800 IKIEEEPKSDKTACTDEWSRLCELEKKQCTVDEEEVP 1836


>AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical
           protein F43E2.11 protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 266 YLKDKIVGFFVGHTMCSGLVRHWSKS*IFYVSDDSSAIEYSM 391
           +LK    GFFV H MC+G +       I  V +   A   +M
Sbjct: 8   FLKQGSTGFFVAHFMCAGFINQQQAEIIIRVPERPVAAAATM 49


>Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical
           protein H25P06.1 protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 235 KEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQIGKTQVNR 74
           +EE KR  D+  QR    + EER+   +E+E       E  QK+ ++ + Q+ R
Sbjct: 491 REEEKRLKDLEAQRLRDAEAEERRLLEIEKE--KEEAEERAQKISEMMRYQIER 542


>Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical
           protein R07B7.13 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 457 ELALLLRNMPKPELKTSLKRISHAIFDCGGI 365
           E A +L   PK   +T++K + H +F CG +
Sbjct: 225 EYAKMLDFFPKISKETAIKLVKHGLFMCGSL 255


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -3

Query: 334  PMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACT 155
            P P K  A     +E    I KI    K V+D + E +++ D  R R  + ++E+R+   
Sbjct: 1051 PPPKKEPADEQPEREKEKLILKIPKMLKPVVDDRREDRKERDRDRDR-DRDRDEDREKVR 1109

Query: 154  LEEE 143
             +E+
Sbjct: 1110 DKED 1113


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -3

Query: 334  PMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACT 155
            P P K  A     +E    I KI    K V+D + E +++ D  R R  + ++E+R+   
Sbjct: 1051 PPPKKEPADEQPEREKEKLILKIPKMLKPVVDDRREDRKERDRDRDR-DRDRDEDREKVR 1109

Query: 154  LEEE 143
             +E+
Sbjct: 1110 DKED 1113


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
            protein 12 protein.
          Length = 1280

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -3

Query: 238  LKEEYKRDV-DIVRQRFFKVKEEERKACTLEEELLPPAYREDV 113
            + E+Y+  + D+V +R  ++K+E+R++  L + +LP +  E +
Sbjct: 970  MMEKYQTQLEDLVDERTIELKDEQRRSQHLLQRMLPSSVAEQL 1012


>Z73905-2|CAA98109.3|  529|Caenorhabditis elegans Hypothetical
           protein C32C4.1 protein.
          Length = 529

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 554 TQNSLNLK-LIPYYIEICLPDF 492
           T N ++L  ++P+Y+EICLP F
Sbjct: 325 TLNIIDLSTILPFYLEICLPLF 346


>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical protein
            T21E8.1b protein.
          Length = 1204

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 160  CTLEEELLPPAYREDVQKMIQIGKTQVNRFTYKFKYNSGLD*LSFPKGEQ 11
            C++ E LL    R   Q  ++      N F + F++  GLD L   +G Q
Sbjct: 1047 CSIRENLLYGLTRSVPQLELEKALQTANAFNFVFQFPQGLDTLVGERGAQ 1096


>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical protein
            T21E8.1a protein.
          Length = 1263

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 160  CTLEEELLPPAYREDVQKMIQIGKTQVNRFTYKFKYNSGLD*LSFPKGEQ 11
            C++ E LL    R   Q  ++      N F + F++  GLD L   +G Q
Sbjct: 1106 CSIRENLLYGLTRSVPQLELEKALQTANAFNFVFQFPQGLDTLVGERGAQ 1155


>Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical
           protein K08F4.5 protein.
          Length = 215

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -3

Query: 322 KSTAHGMTHKE---ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTL 152
           K+T  G T      A   + K + P + V + KEE K+D     +   + KEEERK    
Sbjct: 48  KTTTMGSTTANMHPAEPVVEKKEEPKEKVPEKKEEEKKDATKKEEAKEEKKEEERKEEKK 107

Query: 151 EE 146
           EE
Sbjct: 108 EE 109


>U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical
           protein F33G12.3 protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
 Frame = -3

Query: 502 FQTLYVIIRIKMPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPY 323
           FQ L  + R++    +   LL+N  +  L+T L   ++A +    II  +E +       
Sbjct: 32  FQKLENLQRMERMLNKEIELLQNATRKALETHLVTCNYAFYK--SIIDEVEEMENATAVL 89

Query: 322 K-------STAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQ 197
           K       S    +  KE N +I  ++ P K V+    + KR+ D++ Q
Sbjct: 90  KTFKRDNVSVTVDIVMKEPNVWIKLVNRPAKTVLIEYRDGKRNGDVIAQ 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,573,416
Number of Sequences: 27780
Number of extensions: 259082
Number of successful extensions: 721
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)