Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j10
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867...    36   0.030
01_07_0190 + 41880032-41880319,41880501-41880521,41880992-418810...    35   0.068

>01_07_0191 +
           41885121-41885909,41886152-41886190,41886701-41886784,
           41887331-41887413,41887501-41887588,41887736-41887990,
           41888275-41888403
          Length = 488

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 671 GADVIVVGRGITAAKNPEVQAVAYKDALWKCYIKRIS 561
           G+D+I+VGRGI  A NP   A  Y+   W  Y   +S
Sbjct: 452 GSDIIIVGRGIIRANNPAETAREYRIQGWHAYQSSLS 488


>01_07_0190 +
           41880032-41880319,41880501-41880521,41880992-41881075,
           41881177-41881259,41881341-41881428,41881545-41881799,
           41882530-41882658
          Length = 315

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 671 GADVIVVGRGITAAKNPEVQAVAYKDALWKCY 576
           G+D+I+VGRGI  A NP   A  Y+   W  Y
Sbjct: 279 GSDIIIVGRGIIKASNPAETAREYRIQGWGAY 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,616
Number of Sequences: 37544
Number of extensions: 240842
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)