Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j10
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L00968-1|AAA29012.1|  493|Drosophila melanogaster UMP synthase; ...    42   8e-04
AY058714-1|AAL13943.1|  493|Drosophila melanogaster LD45235p pro...    42   8e-04
AE014297-2922|AAF55842.1|  493|Drosophila melanogaster CG3593-PA...    42   8e-04
BT012305-1|AAS77430.1|  255|Drosophila melanogaster LP21877p pro...    29   7.7  
AE013599-2588|AAM68478.1|  614|Drosophila melanogaster CG30110-P...    29   7.7  

>L00968-1|AAA29012.1|  493|Drosophila melanogaster UMP synthase; r-l
           gene product protein.
          Length = 493

 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -3

Query: 671 GADVIVVGRGITAAKNPEVQAVAYKDALWKCYIKRIS 561
           GAD+ VVGRGI  A +P+  A  Y+D LW  Y  R++
Sbjct: 456 GADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVA 492


>AY058714-1|AAL13943.1|  493|Drosophila melanogaster LD45235p
           protein.
          Length = 493

 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -3

Query: 671 GADVIVVGRGITAAKNPEVQAVAYKDALWKCYIKRIS 561
           GAD+ VVGRGI  A +P+  A  Y+D LW  Y  R++
Sbjct: 456 GADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVA 492


>AE014297-2922|AAF55842.1|  493|Drosophila melanogaster CG3593-PA
           protein.
          Length = 493

 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -3

Query: 671 GADVIVVGRGITAAKNPEVQAVAYKDALWKCYIKRIS 561
           GAD+ VVGRGI  A +P+  A  Y+D LW  Y  R++
Sbjct: 456 GADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVA 492


>BT012305-1|AAS77430.1|  255|Drosophila melanogaster LP21877p
           protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 102 SQLRWRHSSKWKDFTKSANYFIRILN 25
           S +  RHS K ++F KS+ YF +I N
Sbjct: 223 SHINSRHSQKRRNFQKSSKYFRKIAN 248


>AE013599-2588|AAM68478.1|  614|Drosophila melanogaster CG30110-PA
           protein.
          Length = 614

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 102 SQLRWRHSSKWKDFTKSANYFIRILN 25
           S +  RHS K ++F KS+ YF +I N
Sbjct: 223 SHINSRHSQKRRNFQKSSKYFRKIAN 248


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,935,628
Number of Sequences: 53049
Number of extensions: 435317
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)