Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j08
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.49 
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   2.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.6  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   6.1  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
 Frame = +2

Query: 131 VIDLKKFTFLSLKYLITIFGDLGILLSDR*L*MSKTNLFSIKRFFKL*STIALCEF*TKS 310
           VID+     +S  Y + ++ D  +LL      ++  +L  I   F L    A C F   S
Sbjct: 203 VIDVVPADCISSNYALYVYSDAVVLLESHEKFIASYSLAEITSVFVLADGTA-CIFTLSS 261

Query: 311 E---RSSRTVEPSLIMISK*----PSKSASRIECAT*SLLPYDHK------TKTQPISCN 451
               +  ++ EP   +ISK     P KS + ++    SL  Y  K      T+    SCN
Sbjct: 262 STLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTEGTVDSCN 321

Query: 452 SCKLSYT 472
            CKLS T
Sbjct: 322 LCKLSNT 328


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = -1

Query: 405 RDHVAHSMRDADLEGYFDIIISEGSTVREERSDLVQNSHNAIVDYNLKKRFIENKFVFDI 226
           R  +   M +  LEG   + + +G++   E+   VQ SH  +V       +   K    +
Sbjct: 75  RQRLQQLMIEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARKKIALYSLEKAKLRL 134

Query: 225 HNHRSDNNIPKSPKIVI 175
              R  + IP  P+IV+
Sbjct: 135 KKEREISEIP-VPEIVL 150


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 143 SSQSHLSTICQLIITRTISTSKSNDAPPLCAXWHNYQRTR*ST 15
           SS SH S++      ++ S+SKS+ AP   A +HN   +R S+
Sbjct: 395 SSSSHSSSLSS---HKSSSSSKSSSAPVSSAFYHNSTSSRSSS 434


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 532 HDHVRKSPRQRFAFERDHFVVWQQKPFFKK 621
           H HVR+ P      E D F  W  + +++K
Sbjct: 267 HIHVRRFPISEIPTEEDQFTDWLYQRWYEK 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,868
Number of Sequences: 5004
Number of extensions: 66535
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)