Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j08
         (708 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065868-1|BAC06086.1|  309|Homo sapiens seven transmembrane hel...    31   3.1  
BC033492-1|AAH33492.2|  753|Homo sapiens SRY (sex determining re...    31   5.3  
AB022083-1|BAA37146.1|  753|Homo sapiens SOX30 protein protein.        31   5.3  

>AB065868-1|BAC06086.1|  309|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 104 LLVGRSSTSVIDLKKFTFLSLKYLITIFGDLGILL 208
           +L+G +    + +  FTFL L YL++I G+L IL+
Sbjct: 11  ILLGLTDVPELQVAVFTFLFLAYLLSILGNLTILI 45


>BC033492-1|AAH33492.2|  753|Homo sapiens SRY (sex determining
           region Y)-box 30 protein.
          Length = 753

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 681 FKTPVLGHMCVLSNKPPMYSFLKEWFLL-PHY 589
           ++ P LGH   L   PP +SF   +FL  PHY
Sbjct: 592 YQPPPLGHPATLFGTPPRFSFHHPYFLPGPHY 623


>AB022083-1|BAA37146.1|  753|Homo sapiens SOX30 protein protein.
          Length = 753

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 681 FKTPVLGHMCVLSNKPPMYSFLKEWFLL-PHY 589
           ++ P LGH   L   PP +SF   +FL  PHY
Sbjct: 592 YQPPPLGHPATLFGTPPRFSFHHPYFLPGPHY 623


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,572,114
Number of Sequences: 237096
Number of extensions: 2137396
Number of successful extensions: 4036
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4032
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)