Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j07
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   5.6  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   9.9  

>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 654 KEMILSSRMKIMKKVNPRAKKR 589
           K  +  S   I K++NPR++KR
Sbjct: 206 KHKVTGSNASIFKRINPRSRKR 227


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 661 EEEGDDSQFKDEDNEEGE 608
           EEE DD   +DED +E E
Sbjct: 204 EEEDDDDDDEDEDEDEDE 221


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 65  HGRPAAV*YKMTVLQSTLMMLNIRLNLKIHLCEY 166
           HG  A + Y   V ++++  L I +NL +H+  Y
Sbjct: 149 HGATAVLVYTQIVGRTSISWLIIEINLLVHVTMY 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,481
Number of Sequences: 5004
Number of extensions: 43051
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)