Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15j07
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 29 3.3
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 29 3.3
08_01_0423 + 3740344-3740408,3740949-3741015,3742110-3742218,374... 28 5.9
04_04_0387 + 24869594-24871480 28 5.9
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 28 5.9
01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748... 28 5.9
10_08_0645 - 19562886-19564484 28 7.7
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 28 7.7
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225... 28 7.7
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 664 DEEEGDDSQFKDEDNEEGEPKGKK 593
DEEE ++ + +DED+EE + K KK
Sbjct: 328 DEEEEEEDEDEDEDDEEEKSKPKK 351
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 664 DEEEGDDSQFKDEDNEEGEPKGKKAKMS 581
DE+E ++ + +DED ++ E K K K S
Sbjct: 326 DEDEEEEEEDEDEDEDDEEEKSKPKKKS 353
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 664 DEEEGDDSQFKDEDNEEGEPKGKKA 590
+EEE D+ + +D++ E+ +PK K A
Sbjct: 330 EEEEEDEDEDEDDEEEKSKPKKKSA 354
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 664 DEEEGDDSQFKDEDNEEGEPKGKKAKMS 581
DEE+ DD + +DED E+G + +K S
Sbjct: 51 DEEDDDDDEDEDEDGEQGAIGNEGSKQS 78
>08_01_0423 +
3740344-3740408,3740949-3741015,3742110-3742218,
3742320-3742447,3742899-3743324
Length = 264
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 664 DEEEGDDSQFKDEDNEEGEPKGK 596
+EEE D+ +DED EEG+ G+
Sbjct: 224 EEEEEDNDDDEDEDEEEGQEDGE 246
>04_04_0387 + 24869594-24871480
Length = 628
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 664 DEEEGDDSQFKDEDNEEGEPKGKKAK 587
++E+ Q +DED ++ P+G+ AK
Sbjct: 562 EDEDEQQEQIEDEDEQQESPRGRSAK 587
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 664 DEEEGDDSQFKDEDNEEGEPKGKKAK 587
+EEE ++ K E+N+E PK KKA+
Sbjct: 236 EEEEVSEADKKVEENKEETPKNKKAR 261
>01_02_0053 +
10673264-10674510,10674552-10674576,10674802-10674886,
10675074-10675084
Length = 455
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 661 EEEGDDSQFKDEDNEEGE 608
EEEG D +D+D+EEGE
Sbjct: 397 EEEGTDESDEDDDSEEGE 414
>10_08_0645 - 19562886-19564484
Length = 532
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 486 GDGTTSPKWVSRRFVH 533
GDG SPKW S F H
Sbjct: 186 GDGAPSPKWTSAPFTH 201
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 664 DEEEGDDSQFKDEDNEEGEPKGKKAK 587
+ EE DD + +D+E GE KG K +
Sbjct: 438 ESEEDDDEEDDSDDDENGEIKGGKGR 463
>01_01_0272 -
2249662-2249721,2250110-2250335,2250419-2250615,
2250707-2250955,2251047-2251176,2251473-2251564,
2251735-2251855,2251940-2252028,2252149-2252271,
2252379-2252506,2253039-2253147,2253701-2254000
Length = 607
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 664 DEEEGDDSQFKDEDNEEGEPKGKKAKMS 581
D EE + D+D E EP GK+ ++S
Sbjct: 50 DAEEEGSGEVDDDDGEAAEPSGKEEEVS 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,138,174
Number of Sequences: 37544
Number of extensions: 283395
Number of successful extensions: 1118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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