Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j07
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK057442-1|BAB71488.1|  556|Homo sapiens protein ( Homo sapiens ...    31   3.7  
BC003380-1|AAH03380.1|  268|Homo sapiens acidic (leucine-rich) n...    30   6.5  
AY057381-1|AAL25814.1|  266|Homo sapiens lecuine-rich acidic pro...    30   6.5  
AL138795-4|CAI22808.1|  268|Homo sapiens acidic (leucine-rich) n...    30   6.5  
AL138795-3|CAI22809.1|  136|Homo sapiens acidic (leucine-rich) n...    30   6.5  
AL138795-1|CAI22806.1|  220|Homo sapiens acidic (leucine-rich) n...    30   6.5  
AK223469-1|BAD97189.1|  266|Homo sapiens acidic (leucine-rich) n...    30   6.5  
AK095228-1|BAC04505.1|  218|Homo sapiens protein ( Homo sapiens ...    30   6.5  
AK092672-1|BAC03942.1|  268|Homo sapiens  mRNA.  protein.              30   6.5  

>AK057442-1|BAB71488.1|  556|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32880 fis, clone TESTI2004122. ).
          Length = 556

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 654 KEMILSSRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAWRP 511
           +E +LS   K+ ++  PR K R  R M     H P+R PR E T  +P
Sbjct: 496 EEQLLSEAGKVDREGTPR-KPRSHRSMGVRMEHSPQRPPRTEPTGSQP 542


>BC003380-1|AAH03380.1|  268|Homo sapiens acidic (leucine-rich)
           nuclear phosphoprotein 32 family, member E protein.
          Length = 268

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 664 DEEEGDDSQFKDEDNEEGEPKG 599
           D+E+GD+   ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183


>AY057381-1|AAL25814.1|  266|Homo sapiens lecuine-rich acidic
           protein-like protein protein.
          Length = 266

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 664 DEEEGDDSQFKDEDNEEGEPKG 599
           D+E+GD+   ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183


>AL138795-4|CAI22808.1|  268|Homo sapiens acidic (leucine-rich)
           nuclear phosphoprotein 32 family, member E protein.
          Length = 268

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 664 DEEEGDDSQFKDEDNEEGEPKG 599
           D+E+GD+   ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183


>AL138795-3|CAI22809.1|  136|Homo sapiens acidic (leucine-rich)
           nuclear phosphoprotein 32 family, member E protein.
          Length = 136

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 664 DEEEGDDSQFKDEDNEEGEPKG 599
           D+E+GD+   ++E+NE G P+G
Sbjct: 30  DDEDGDEDDEEEEENEAGPPEG 51


>AL138795-1|CAI22806.1|  220|Homo sapiens acidic (leucine-rich)
           nuclear phosphoprotein 32 family, member E protein.
          Length = 220

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 664 DEEEGDDSQFKDEDNEEGEPKG 599
           D+E+GD+   ++E+NE G P+G
Sbjct: 114 DDEDGDEDDEEEEENEAGPPEG 135


>AK223469-1|BAD97189.1|  266|Homo sapiens acidic (leucine-rich)
           nuclear phosphoprotein 32 family, member E variant
           protein.
          Length = 266

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 664 DEEEGDDSQFKDEDNEEGEPKG 599
           D+E+GD+   ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183


>AK095228-1|BAC04505.1|  218|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37909 fis, clone CTONG1000022, highly similar to
           Mus musculus cerebellar postnatal development protein-1
           (Cpd1) ).
          Length = 218

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 664 DEEEGDDSQFKDEDNEEGEPKG 599
           D+E+GD+   ++E+NE G P+G
Sbjct: 114 DDEDGDEDDEEEEENEAGPPEG 135


>AK092672-1|BAC03942.1|  268|Homo sapiens  mRNA.  protein.
          Length = 268

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 664 DEEEGDDSQFKDEDNEEGEPKG 599
           D+E+GD+   ++E+NE G P+G
Sbjct: 162 DDEDGDEDDEEEEENEAGPPEG 183


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,303,336
Number of Sequences: 237096
Number of extensions: 1597985
Number of successful extensions: 5810
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5665
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)