Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15j03
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 31 0.79
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 29 3.2
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471 28 5.6
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760... 28 7.4
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 27 9.7
05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013 27 9.7
05_03_0484 + 14599786-14602197 27 9.7
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 27 9.7
>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 308 DKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKLP 156
DKL + S+L + N+ L+++YD+ F+T K K A +LP
Sbjct: 1141 DKLRQWYLSMLQKAIKENIVVELTNLYDQF----FVTAKECKIKVSAARLP 1187
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -3
Query: 605 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 471
+ I+ N Y+ +W T+ QP S W L K + A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177
>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
Length = 331
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 557 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 447
+ + +PEWPSS A+ N PEL V + D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206
>11_02_0036 +
7599646-7599950,7600106-7600145,7600403-7600437,
7600789-7601189,7601281-7601361,7601451-7601536
Length = 315
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 441 THLFSVIKNEHKICQFGRVFHQIP 512
TH F +K E+ IC F R IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 158 PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAA 36
PVAP++ P + + ++ + PA + S+KN T AA
Sbjct: 7 PVAPASPSPSPAAAADGEEGEGPAPAAEDDSLKNDVYTAAA 47
>05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013
Length = 829
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 88 TEFFLFLLPLIEVGTYSVVDGATGNLSATVLNLAI 192
T F+FLL ++ VG YS V G A +L LAI
Sbjct: 258 TYVFVFLLVVLLVGFYSDVIGTNSFHGALMLGLAI 292
>05_03_0484 + 14599786-14602197
Length = 803
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -3
Query: 230 YDEVLT--RDFITKNMAKFKTVALKLPVAPSTTEYV-PTSISGSKKRKNSVPAKQRSSI 63
YD +L F +++ K L P+ P V P +SG K K +VPA R ++
Sbjct: 349 YDAILNGLEVFKLQDIGKKSLAGLNPPLPPQPKSDVNPKGVSGGGKSKGAVPASIRGAM 407
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/107 (20%), Positives = 44/107 (41%)
Frame = -3
Query: 326 ESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKLPVAP 147
ES + + + + NET + +AP S+ +D ++ + K+ + T L VA
Sbjct: 555 ESQGWKYSMQASMLEIYNETIRDLLAPGRSNNFDLSTSKQYTIKHDPQGNTTVTDLTVAD 614
Query: 146 STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNT 6
+ TS+ + SV Q + +R + + ++NT
Sbjct: 615 VFSSADVTSLLAKASQSRSVGRTQMNEQSSRSHFVFTLKISGSNENT 661
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,040,703
Number of Sequences: 37544
Number of extensions: 348132
Number of successful extensions: 899
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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