Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15j03
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical ... 32 0.40
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 31 0.53
AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock tr... 31 0.93
AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock tr... 31 0.93
AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical ... 31 0.93
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 29 3.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 5.0
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical... 28 5.0
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 28 6.6
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 27 8.7
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical
protein Y95B8A.7 protein.
Length = 608
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -3
Query: 308 DKLYSEFYSLLNE--TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTT 138
D+ +E Y+ LN F +NV L+S I + + D I +++ K ++LP +TT
Sbjct: 260 DRTINEKYAGLNPGVEFISNVDRLISDINESLKYVSDKIERDVRKIPEDVVELPTTTTTT 319
Query: 137 EYVPTSISGSKK 102
E P ++ G +
Sbjct: 320 EQPPRTVLGCSR 331
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Frame = -3
Query: 341 LAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVA-- 168
LA +K+ + D+L + LN ++ AP + +++ + ++ ++ + A A
Sbjct: 33 LALVKKPDKGHDELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYMPASTAPTSASATA 92
Query: 167 --LKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 30
LK AP+ PT+ G +K +S A + S R+ + P+
Sbjct: 93 PDLKKEKAPAEKPSKPTAPPGVQKSSSSPSASKAESRPLRKRISPPPS 140
>AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 350 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 222
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 350 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 222
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical
protein Y53C10A.12 protein.
Length = 671
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 350 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 222
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 522 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 647
A PLG+L VPT Q F+ N ++ HF V+ +R+Y
Sbjct: 72 AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114
>Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical
protein F20E11.15 protein.
Length = 294
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +3
Query: 441 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 602
T LF++I + IC+ G+ ++ P L L+D+ + V ++F+ V N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245
Query: 603 LAFGHFAFVLHD 638
G FA VL +
Sbjct: 246 TNSGPFASVLRE 257
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 76 CLAGTEFFLFLLPLIEVGTYSVV 144
C AG FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 170 ALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLL--MVSDNTQ 3
+L V ST + TS SK + VP++ S+ N +T + TLL +S +TQ
Sbjct: 1387 SLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTSSTPTNPTGSTESSTLLSSTISGSTQ 1444
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 272 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 430
RL C + Y+A LL LP+ + Q+ S +L RC T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260
>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
protein Y47G6A.17 protein.
Length = 1736
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -2
Query: 420 DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 262
++ F+R NS E++ TD + R LRNA + L +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 22 IKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEVGTYSVVDGATGNLSATVLNL 186
I+ V A +L FF G FF+FL+P++ + + +V G +++ +L L
Sbjct: 58 IQIVNAIYILYFFFTLFMAFFGATFFVFLIPVLLI-VFPLVTGLMHDVNEFLLGL 111
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 647 VMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 492
++P M K S K++ +Y + ++ +K KQ E + P +WD VKN+
Sbjct: 1085 LLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 173 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 33
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 493 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 537
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 173 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 33
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 452 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,069
Number of Sequences: 27780
Number of extensions: 318933
Number of successful extensions: 1058
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -