Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15j02
         (702 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   4.0  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   9.3  
AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding pr...    23   9.3  
AJ618926-1|CAF02005.1|  315|Anopheles gambiae odorant-binding pr...    23   9.3  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 378 AIVIVCFVWIVAFQLYAAHFN 440
           A++++C V+ +AF L++ H N
Sbjct: 774 ALILLCVVFGIAFVLFSRHKN 794


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
            transcription factor FRU-MA protein.
          Length = 960

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 104  RPLPNPCPKCF*RSNTECCFQHHNPLKEPHGLDRCRNNIL 223
            RP  + CP C  +       + H  +K P   DR  N+I+
Sbjct: 919  RPQSHECPVCGQKFTRRDNMKAHCKVKHPELRDRFYNHIV 958


>AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding
           protein AgamOBP50 protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 447 FECCMQQAAVTAGVDKITIDHLLLRQ 524
           F+C  ++  +  GVD I ++ +   Q
Sbjct: 63  FDCTYREMGILTGVDDINVEQISTNQ 88


>AJ618926-1|CAF02005.1|  315|Anopheles gambiae odorant-binding
           protein OBPjj6b protein.
          Length = 315

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 447 FECCMQQAAVTAGVDKITIDHLLLRQ 524
           F+C  ++  +  GVD I ++ +   Q
Sbjct: 212 FDCTYREMGILTGVDDINVEQISTNQ 237


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,440
Number of Sequences: 2352
Number of extensions: 15790
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)