Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15i24
(528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical pr... 263 6e-71
Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical pr... 51 6e-07
AC084196-2|AAK39622.1| 355|Caenorhabditis elegans Hypothetical ... 30 0.89
U41011-4|AAA82287.1| 294|Caenorhabditis elegans Hypothetical pr... 29 2.7
U39851-2|AAF99874.1| 540|Caenorhabditis elegans Hypothetical pr... 28 3.6
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 4.8
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 4.8
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 27 6.3
AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical ... 27 8.3
>Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical
protein F28D1.7 protein.
Length = 143
Score = 263 bits (644), Expect = 6e-71
Identities = 118/143 (82%), Positives = 132/143 (92%)
Frame = -1
Query: 480 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 301
MGKP+G+ TARK HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60
Query: 300 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 121
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120
Query: 120 KVVKVANVSLLALYKEKKERPRS 52
K+VKVAN SL+AL+K KKERPRS
Sbjct: 121 KIVKVANTSLIALFKGKKERPRS 143
>Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical
protein T03D8.2 protein.
Length = 157
Score = 50.8 bits (116), Expect = 6e-07
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = -1
Query: 354 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 175
G SH KGIVL+ V K+PNS RKC V+L G +V A++P G ++++E+ +VLV
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128
Query: 174 AGFGRK 157
G GR+
Sbjct: 129 KG-GRR 133
>AC084196-2|AAK39622.1| 355|Caenorhabditis elegans Hypothetical
protein Y55D5A.3 protein.
Length = 355
Score = 30.3 bits (65), Expect = 0.89
Identities = 25/98 (25%), Positives = 38/98 (38%)
Frame = +1
Query: 136 NVTDGVTFTTESRH*YXXXXXXXXXATVTGDECGHFLSVLNELYTDAFADGRVGLLSFYT 315
N+T V F Y +TG G + LN Y+ A+ D L+ FYT
Sbjct: 150 NITIHVDFVRNGTIQYSGLTFALYNGVLTGQRPGEYSVSLNARYSGAYIDNI--LMEFYT 207
Query: 316 NFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFT 429
F + +R E + T+ ++ F R LF+
Sbjct: 208 KFKRPVSFFIRDVLENQA----TYTEAVDAFSRTHLFS 241
>U41011-4|AAA82287.1| 294|Caenorhabditis elegans Hypothetical
protein D2024.4 protein.
Length = 294
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 409 VRPSLFTTVVHVLTRRSYSSG 471
VRP + TTV+HV+ R SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209
>U39851-2|AAF99874.1| 540|Caenorhabditis elegans Hypothetical
protein C23G10.6 protein.
Length = 540
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 22 GSLITSDTPYGSWSLLFLFVESEERHVGYFYHLKTNSGNVTDGV 153
GS++ S T W + L V E +V + + +TN DGV
Sbjct: 313 GSMVKSSTMPIDWKMNILKVIKSEPNVTFIWKYETNDTKFADGV 356
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 116 TLKRTPGMSPTA*PLRPNPATSTSS 190
T RTP +P A P RP P+ S+++
Sbjct: 38 TTMRTPAATPAAPPTRPTPSRSSAA 62
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 116 TLKRTPGMSPTA*PLRPNPATSTSS 190
T RTP +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 237 TAFVPRDGCLNHIEEN 190
T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668
>AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical
protein Y46E12BL.4 protein.
Length = 466
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 385 HVGFLEFFVRPSLFTTVVHVLTRRS--YSSGFTHLDSTTPIGYGWE 516
HV +E+ R VV V T+ + +++G+T L TT YGW+
Sbjct: 158 HVWQIEWPERQRGTHAVVGVATKNAPLHAAGYTALIGTTDESYGWD 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,371,953
Number of Sequences: 27780
Number of extensions: 293650
Number of successful extensions: 848
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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