Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i21
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   1.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   2.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.1  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   6.1  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   8.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.1  

>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 360 KMLCIAADIKGQVEQLELVNQYLDAPKSEKLEFVYNCSDLDIN 232
           K+LC+  D    V++  L N +L     E LE  + C DLD N
Sbjct: 73  KLLCVRLD--NFVQEANLQNIHLVTVYLELLEKAFECIDLDDN 113


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 158 TVGALYLSVKYAIFLVKHRDFKSSSFISKSEQLYTNSSFSLL 283
           T+G +  SV  A+F +   D+ S SF++ +  L   +S ++L
Sbjct: 346 TIGFIIYSVLDALFDLLSLDYSSPSFLNNTLSLMNANSITIL 387


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +2

Query: 215  DFKSSSFISKSEQLYTNSSFSLLGASKYWFTSS 313
            D K++   +++  LY N+  +++GA +Y F+ +
Sbjct: 1165 DLKTNDPYAETNALYQNNPVAIMGAREYIFSEN 1197


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 9   WFNSYQXLILLIRLNKNY 62
           W+NSYQ +I L+R+ + +
Sbjct: 252 WYNSYQGVIGLVRIMEGF 269


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 267 EFVYNCSDLDINEEDLKSLCLTKNIAYFTERYNAPTVLKA 148
           + V+N +      E++ S  + KN+  F E++ A   LKA
Sbjct: 286 DIVFNYASSKKISEEMISQAIDKNLQEFEEKFQATFPLKA 325


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
 Frame = +2

Query: 23  SXFNFTNSSKQKLFTCCFSSI*HMAFINNSLCFMNAS*TAGWAFSTVGALYLSVKYAIFL 202
           S   FT+S          +SI   A    +   + +S T+ + +ST  ++       I  
Sbjct: 129 SMTTFTSSQTNSGHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVT 188

Query: 203 VKHRDFKSSSF--ISKSEQLYTNSSFSLLGASKYWFTSSSCST*PLISAAM 349
           +      +SSF  I+ +  + ++SSF+    S Y+ TSS   +  + SA++
Sbjct: 189 LPPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASL 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,602
Number of Sequences: 5004
Number of extensions: 35075
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)