Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i18
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical
           protein T14B4.3 protein.
          Length = 296

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 143 AVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLD 316
           +V    F   +FG    VG  QA      F+   A+++    G   F+Y+ H F F D
Sbjct: 38  SVSLLNFNKNAFGLGAAVGAHQAIGDEKLFQKPKALLIIVIDGLENFDYDGHAFNFTD 95


>Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical
           protein C40H1.9 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 168 CANCANPTALWCTRKTRQLSKFY---WKITLPLLMLTKPPI 55
           C+NC     +WC  +++  S F     KI+L L   TKP +
Sbjct: 25  CSNCVGSGQVWCVEQSQCNSSFVSCSTKISLQLNCPTKPKV 65


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 367 ASTSSNVTMTRGTANFD--IKEFKSMFIVFKGIT 272
           A+TS+NVT  + T NFD  +K    +  V  GIT
Sbjct: 133 ATTSTNVTNAKSTTNFDGYLKHISVIAHVANGIT 166


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 206 DRPQHGAAVRTRGARIAQIQLHSGVHEKRGSS 111
           D P H AA +T G R++ I   SG     G S
Sbjct: 92  DHPAHAAAAKTHGTRLSGIAGQSGGAPPSGPS 123


>Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 421 NSIFLGTVYDYGVKSPNAASTSSNVT 344
           NS F+G +YDY V SP    +S N T
Sbjct: 194 NSRFVGNLYDY-VNSPTLMKSSGNST 218


>Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 421 NSIFLGTVYDYGVKSPNAASTSSNVT 344
           NS F+G +YDY V SP    +S N T
Sbjct: 194 NSRFVGNLYDY-VNSPTLMKSSGNST 218


>Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.10 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 21/88 (23%), Positives = 36/88 (40%)
 Frame = +3

Query: 234 NRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPRK 413
           N  + LSST +          + L + +  F V  + +     L    ++    Y V   
Sbjct: 214 NSKLDLSSTTMRQQNRALINGLTLQAFLPLFCVCPIFICSFVALITKTEILLEQYFVS-V 272

Query: 414 MLLVPTLLEPSLTMSSIDSGFSAIYIWL 497
           +LL+PT  EP +T  ++      + IWL
Sbjct: 273 VLLLPTFFEPYITFYTVSHYRKQVRIWL 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,783
Number of Sequences: 27780
Number of extensions: 286652
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)