Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i16
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023704-1|AAY85104.1|   64|Drosophila melanogaster IP03042p pro...   101   1e-21
AE013599-1171|AAF58753.1|   64|Drosophila melanogaster CG7637-PA...   101   1e-21
AY095089-1|AAM11417.1|  629|Drosophila melanogaster RE63854p pro...    28   9.5  
AE014297-495|AAF54098.1|  629|Drosophila melanogaster CG1264-PA ...    28   9.5  
AE001572-21|AAD19811.1|  629|Drosophila melanogaster homeodomain...    28   9.5  

>BT023704-1|AAY85104.1|   64|Drosophila melanogaster IP03042p
           protein.
          Length = 64

 Score =  101 bits (241), Expect = 1e-21
 Identities = 46/64 (71%), Positives = 52/64 (81%)
 Frame = -1

Query: 603 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 424
           MYL Y +N+ GDR YTL      G+PTLSAHPARFSPEDKYSR R+ IKKRFGLLLTQ+P
Sbjct: 1   MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60

Query: 423 EPIH 412
           EPI+
Sbjct: 61  EPIY 64


>AE013599-1171|AAF58753.1|   64|Drosophila melanogaster CG7637-PA
           protein.
          Length = 64

 Score =  101 bits (241), Expect = 1e-21
 Identities = 46/64 (71%), Positives = 52/64 (81%)
 Frame = -1

Query: 603 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 424
           MYL Y +N+ GDR YTL      G+PTLSAHPARFSPEDKYSR R+ IKKRFGLLLTQ+P
Sbjct: 1   MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60

Query: 423 EPIH 412
           EPI+
Sbjct: 61  EPIY 64


>AY095089-1|AAM11417.1|  629|Drosophila melanogaster RE63854p
           protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 606 KMYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKY 481
           ++Y   +L      EY + T    G P    HP+  SP D Y
Sbjct: 111 QLYPHSHLFSPSAAEYGITTSTTTGNPGTPLHPSSHSPADSY 152


>AE014297-495|AAF54098.1|  629|Drosophila melanogaster CG1264-PA
           protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 606 KMYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKY 481
           ++Y   +L      EY + T    G P    HP+  SP D Y
Sbjct: 111 QLYPHSHLFSPSAAEYGITTSTTTGNPGTPLHPSSHSPADSY 152


>AE001572-21|AAD19811.1|  629|Drosophila melanogaster homeodomain
           protein protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 606 KMYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKY 481
           ++Y   +L      EY + T    G P    HP+  SP D Y
Sbjct: 111 QLYPHSHLFSPSAAEYGITTSTTTGNPGTPLHPSSHSPADSY 152


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,966,408
Number of Sequences: 53049
Number of extensions: 509104
Number of successful extensions: 835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)