Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i15
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984...   163   7e-41
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538...   161   3e-40
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615...   141   3e-34
03_05_1115 + 30506986-30507396                                         28   4.9  
11_06_0007 - 19171122-19172036                                         27   8.5  

>05_07_0131 +
           27898028-27898042,27898159-27898274,27898361-27898424,
           27899450-27899791
          Length = 178

 Score =  163 bits (397), Expect = 7e-41
 Identities = 70/149 (46%), Positives = 101/149 (67%)
 Frame = -3

Query: 516 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 337
           +  +Y+V+GR LP+  +  P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 336 XXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 157
                     KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQ
Sbjct: 65  EIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 156 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 70
           IIK   +    C+R   KQFHNS I+FPL
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHNSNIKFPL 153


>01_06_0730 -
           31552747-31553088,31553583-31553646,31553743-31553858,
           31553964-31553978
          Length = 178

 Score =  161 bits (392), Expect = 3e-40
 Identities = 70/149 (46%), Positives = 100/149 (67%)
 Frame = -3

Query: 516 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 337
           +  +Y+V+GR LP+  +  P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+   
Sbjct: 5   RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAIN 64

Query: 336 XXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 157
                     KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 156 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 70
           IIK   +    C+R   KQFH S I+FPL
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHKSDIKFPL 153


>01_06_0180 -
           27260099-27260440,27261236-27261350,27261403-27261518,
           27261594-27261608
          Length = 195

 Score =  141 bits (342), Expect = 3e-34
 Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 17/166 (10%)
 Frame = -3

Query: 516 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFL 388
           +  +Y+V+GR LP+  +  P +Y+M++++ + + AKS+F          W       YFL
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFL 64

Query: 387 RQLKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQ 208
           R+LKK KK+ G+++             KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q
Sbjct: 65  RKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQ 124

Query: 207 CYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL 70
            Y +M +RHR R   IQIIK   +    C+R   KQFHN +I+FPL
Sbjct: 125 MYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPL 170


>03_05_1115 + 30506986-30507396
          Length = 136

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 158 RSSKWK*SRLLRVAVHRSNSSTTAPSDSHCPXRVHHYKRLNTFAYQ 21
           R++ WK  R        S+SS+++PS    P R HH++  +T + Q
Sbjct: 93  RTASWKQRR----RASGSSSSSSSPSPRAAPERHHHHRAPSTLSVQ 134


>11_06_0007 - 19171122-19172036
          Length = 304

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 95  WNCLTCGRRHAAALITSTLMICI 163
           W C  CG R AA L+     +C+
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCL 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,085,997
Number of Sequences: 37544
Number of extensions: 327802
Number of successful extensions: 920
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)