Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i14
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0209 - 23282848-23284110                                         32   0.42 
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    29   2.2  
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733...    29   2.2  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    29   2.9  
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870...    27   8.9  
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    27   8.9  

>05_05_0209 - 23282848-23284110
          Length = 420

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -3

Query: 561 MATFNEFEYLQYWFLLSFL---MSVALNAPTL-WT 469
           MAT    E+LQ+WF+LS L   ++VALN   + WT
Sbjct: 260 MATILAVEFLQWWFMLSLLPEAIAVALNVAIMAWT 294


>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 594 LCTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTA 466
           L  + A+++G       +    YW LL  L +V LN   +WTA
Sbjct: 50  LNAFGAIVLGAPIGIKYWAATTYWSLLMSLFTVVLNVSAIWTA 92


>04_03_0927 +
           20871487-20871903,20872667-20872812,20873204-20873301,
           20873378-20873572,20873670-20873797,20873892-20874050,
           20875119-20875223,20875449-20875559,20875653-20875790,
           20875909-20876091,20876362-20876517,20876615-20876738,
           20876820-20877030,20877614-20877729,20877828-20878053,
           20878218-20878311,20879198-20879275,20879822-20879971,
           20880086-20880292,20880584-20880788,20880990-20881096
          Length = 1117

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 373 KHHIIQQHVTKVHGLEQLHFVNYFMGFCGFERR 471
           K + I QH+ ++H   +L F+N F+ F G+  R
Sbjct: 735 KSYDISQHLHEIHESVRLAFLNSFLDFAGYLER 767


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 514 QQKPVL*IFKFVECCHVSH 570
           +QKPVL  + F+ CCH SH
Sbjct: 97  RQKPVL--YTFINCCHTSH 113


>08_02_1563 +
           27886202-27886446,27886533-27886618,27886942-27887030,
           27887193-27887432,27887527-27887648,27888103-27888178,
           27888276-27888383,27888465-27888641,27888959-27889176,
           27889313-27889445,27889584-27889807,27890052-27890205,
           27890297-27890380
          Length = 651

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 351 LYPFDCPKTPHNSTARY*STWLGTASFRKLLHGLL 455
           LYP +CPKT  N T    + +     F +++ G +
Sbjct: 511 LYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFM 545


>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -3

Query: 231 CYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTS 64
           C++V+ +      T+  G +C K+  +     F     ALY  +A ++ L   +T+
Sbjct: 211 CFLVVFYAGTKEPTLQSGSDCKKSARISWGYWFKK---ALYYQVALLYMLARLITN 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,740,433
Number of Sequences: 37544
Number of extensions: 266383
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)