Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i12
         (686 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY044432-1|AAK95822.1|  568|Homo sapiens TRAF6-binding zinc fing...    30   8.9  
AB209601-1|BAD92838.1|  502|Homo sapiens TRAF6-inhibitory zinc f...    30   8.9  

>AY044432-1|AAK95822.1|  568|Homo sapiens TRAF6-binding zinc finger
           protein protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 572 FVLLIHGLAHQEN*VPIDFCHCVECFKS 655
           F +L H   H+ N   ++FC C EC K+
Sbjct: 181 FCMLSHLTRHERNYTKVNFCKCEECEKA 208


>AB209601-1|BAD92838.1|  502|Homo sapiens TRAF6-inhibitory zinc
           finger protein variant protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 572 FVLLIHGLAHQEN*VPIDFCHCVECFKS 655
           F +L H   H+ N   ++FC C EC K+
Sbjct: 115 FCMLSHLTRHERNYTKVNFCKCEECEKA 142


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,920,173
Number of Sequences: 237096
Number of extensions: 1362260
Number of successful extensions: 5362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5362
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)